DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000299 cel-miR-243 172434 F15C11.2 cuAUAGGGCGGCGCUA-GCAUGGc |||:|: ::|: | |||||| auUAUUCUUUUGUAUUCCGUACCa 2 22 202 225 [ce6:I:7028976-7028999:+] 0.4873 125 6 -15.80 -1.2079 MIMAT0000299 cel-miR-243 172434 F15C11.2 cuAUAGGGCGGCGCUA-GCAUGGc |||:|: ::|: | |||||| auUAUUCUUUUGUAUUCCGUACCa 2 22 397 420 [ce6:I:7028976-7028999:+] 0.4873 125 6 -15.80 -1.1966 MIMAT0000325 cel-miR-269 172434 F15C11.2 ucaAAACGGUCUC-AGAACGg || |:| | | |||||| aacUUGGUCUGUGAUCUUGCu 2 18 84 104 [ce6:I:7028858-7028878:+] 0.4843 121 6 -12.54 -0.3253 MIMAT0000325 cel-miR-269 172434 F15C11.2 ucaAAACGGUCUC-AGAACGg || |:| | | |||||| aacUUGGUCUGUGAUCUUGCu 2 18 279 299 [ce6:I:7028858-7028878:+] 0.4843 121 6 -12.54 -0.2966 MIMAT0005822 cel-miR-1019* 172434 F15C11.2 uuUUACUUUGAGCUUGU-----UACG-AGUg |:|||| | ||:|| |||| ||| ccAGUGAAUCCGGAGCAAACCUAUGCAUCAc 2 24 49 79 [ce6:I:7028580-7028610:+] 0.7251 122 0 -18.12 -0.9436 MIMAT0005522 cel-miR-1021 172434 F15C11.2 ggCUCCUAAAG--UGUACUAGAG-UGAa | || | || ||:| |||| ||| acGCGGCUGUCGAACGUCUUCUCAACUc 2 24 161 188 [ce6:I:7028740-7028767:+] 0.7097 122 0 -17.10 -0.9652 MIMAT0011440 cel-miR-2212* 172434 F15C11.2 cuaccgaauaGUUUACGGUGaa ||| |||||| -----aucccCAAUUGCCACac 3 13 1 17 [ce6:I:7028775-7028791:+] 0.5970 132 0 -10.70 -0.2127 MIMAT0011447 cel-miR-2216 172434 F15C11.2 cggAUGGCUGA-AUUUUACACg | :: |:| ||||||||| aaaUCUUUAUUCUAAAAUGUGa 2 19 132 153 [ce6:I:7028906-7028927:+] 0.4873 153 7 -11.94 -1.2428 MIMAT0011447 cel-miR-2216 172434 F15C11.2 cggAUGGCUGA-AUUUUACACg | :: |:| ||||||||| aaaUCUUUAUUCUAAAAUGUGa 2 19 327 348 [ce6:I:7028906-7028927:+] 0.4873 153 7 -11.94 -1.2294 MIMAT0011447 cel-miR-2216 172434 F15C11.2 cggaUGGC-UGAAUUUUACACg |:|| :| :||||||| ucggAUCGUGCCAGAAAUGUGg 2 18 109 130 [ce6:I:7028640-7028661:+] 0.7251 148 7 -13.83 -0.2101 MIMAT0011460 cel-miR-2219 172434 F15C11.2 gaagucgAAAGGGAGC-GUGAAGc ||||:: :| |||||| -------UUUCUUAUGUCACUUCu 2 17 1 17 [ce6:I:7024693-7024709:+] 0.4965 124 6 -11.51 -0.8157 MIMAT0014446 cel-miR-2953-5p 172434 F15C11.2 uaAAAGUGCUUGU----GAAGACAu || ||| | || :|||||| ccUUCCACUAUCAUUUUUUUCUGUa 2 20 54 78 [ce6:I:7028828-7028852:+] 0.4843 134 6 -11.33 -0.1751 MIMAT0014446 cel-miR-2953-5p 172434 F15C11.2 uaAAAGUGCUUGU----GAAGACAu || ||| | || :|||||| ccUUCCACUAUCAUUUUUUUCUGUa 2 20 249 273 [ce6:I:7028828-7028852:+] 0.4843 134 6 -11.33 -0.1577 MIMAT0000004 cel-miR-2 172434 F15C11.2 cgUGUAGUUUCGACC-GACACUAu | | : || :||| ||||||| guAAACUUAACUUGGUCUGUGAUc 2 22 76 99 [ce6:I:7028850-7028873:+] 0.4843 156 7 -15.71 -0.6354 MIMAT0000004 cel-miR-2 172434 F15C11.2 cgUGUAGUUUCGACC-GACACUAu | | : || :||| ||||||| guAAACUUAACUUGGUCUGUGAUc 2 22 271 294 [ce6:I:7028850-7028873:+] 0.4843 156 7 -15.71 -0.5946 MIMAT0000014 cel-miR-43 172434 F15C11.2 cgcugucguucAUUUGACACUAu |:: ||||||| uaaacuuaacuUGGUCUGUGAUc 2 13 77 99 [ce6:I:7028851-7028873:+] 0.4843 144 7 -9.66 -0.6317 MIMAT0000014 cel-miR-43 172434 F15C11.2 cgcugucguucAUUUGACACUAu |:: ||||||| uaaacuuaacuUGGUCUGUGAUc 2 13 272 294 [ce6:I:7028851-7028873:+] 0.4843 144 7 -9.66 -0.5910 MIMAT0000042 cel-miR-70 172434 F15C11.2 uaccuuugugguUGCUGCAUAAu |: :|||||| uuuucuuuugguAUUGCGUAUUc 2 12 437 459 [ce6:I:7029016-7029038:+] 0.4873 127 6 -7.99 -0.1228 MIMAT0000286 cel-miR-231 172434 F15C11.2 aaGACGGACAACU-AGU------GCUCGAAu :||| | || | ||| ||||||| uaUUGCGUAUUCAUUCAUAAAUUCGAGCUUc 2 23 253 283 [ce6:I:7029027-7029057:+] 0.4873 144 7 -13.41 -0.7897 MIMAT0000306 cel-miR-250 172434 F15C11.2 acGGUUGUCAACU-GACACUAa ::||| |||: ||||||| acUUAAC--UUGGUCUGUGAUc 2 20 80 99 [ce6:I:7028854-7028873:+] 0.4843 151 7 -13.64 -0.6317 MIMAT0000306 cel-miR-250 172434 F15C11.2 acGGUUGUCAACU-GACACUAa ::||| |||: ||||||| acUUAAC--UUGGUCUGUGAUc 2 20 275 294 [ce6:I:7028854-7028873:+] 0.4843 151 7 -13.64 -0.5910 MIMAT0000701 cel-miR-359 172434 F15C11.2 aagcagucucuuucUGGUCACu ||||||| ucaucgacugcugcACCAGUGa 2 9 34 55 [ce6:I:7028565-7028586:+] 0.5906 140 7 -15.13 -0.4206 MIMAT0004222 cel-miR-787 172434 F15C11.2 gcuuucUAUG-AUUU-UGCUCGAAu || | |||| ||||||| guauucAUUCAUAAAUUCGAGCUUc 2 18 259 283 [ce6:I:7029033-7029057:+] 0.4873 151 7 -11.19 -0.7860 MIMAT0004232 cel-miR-797 172434 F15C11.2 agaaGAGUAACACUAACGACACUAu ||:| ||:| ||||||| uaaaCUUAACUUGGU--CUGUGAUc 2 22 77 99 [ce6:I:7028851-7028873:+] 0.4843 150 7 -13.88 -0.6068 MIMAT0004232 cel-miR-797 172434 F15C11.2 agaaGAGUAACACUAACGACACUAu ||:| ||:| ||||||| uaaaCUUAACUUGGU--CUGUGAUc 2 22 272 294 [ce6:I:7028851-7028873:+] 0.4843 150 7 -13.88 -0.5665

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-2 58 100 CGUG-UAGUUU-------CG----------ACC-GACACUAU ||| |||| |: ||| ||||||| CCACUAUCAUUUUUUUCUGUAAACUUAACUUGGUCUGUGAUC ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-239a 217 240 -GGUCAUGGAUACACA-UCAUGUUU- || ||||| || ||||:||: UCC-GUACCA--GUUCAAGUAUAAGU ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-249 278 299 CCGUUGCGAGUUUUCAGGACACU || ||:| :|: ||||| AGCUUCGUUGGAGCUUCCUGG-- ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-250 74 100 -ACGGUUGUC---AACU-GACACUAA ||: ||| |||: ||||||| CUGUAAACUUAACUUGGUCUGUGAUC ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-253 20 51 -GGA---AGGGUGUU-----------GCGGAUGAUU ||| ||||||| |||| ACCUAUUUCCCACACACACAACCCUCCGCCG----- ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-256 192 222 AUGUCAG--------AAGAU-ACGUAAGGU- ||||: |||| ||:|||||: -CCAGUUUAAAAUUAUUCUUUUGUAUUCCGU ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-264 32 51 GUAUUGU-UGUUGGUGGGCGG- ||| |||||| :||||| ---CACACACAACCCUCCGCCG ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-268 79 106 -UGGUUUGACGAAGAUUA-AGAACGG- ||: |||| |||: ||||||: AACUUAACUUGGUCUGUGAUCUUGCUU ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-42 72 93 -AGACAUCUACAAUUGGGCCACU |||||| ||||| ||| UUCUGUAAAC-UUAACUUGGUC- ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-43 84 100 CGCUGUCGUUCAUUUGACACUAU || :|| ||||||| --AACUU--GGU---CUGUGAUC ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-50 3 22 -GGGUUCUUAUGGUCUGUAUAGU ||||| |:||| ||||| CCCCAAU--UGCCACACAUAC-- ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-56* 36 52 AUGUUGGGUUUUACCUAGGCGGU- ||||||| ||||||: CACAACCC--------UCCGCCGA ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-72 86 114 -AGUC-GAUACGGU--UGUAGAACGGA- |::| ||:|| :| ||| |||| CUUGGUCUGUGAUCUUGCUUCUCGCCUA ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-73 79 106 -UGACUUGA--CGGAUG-UAGAACGGU ||| |||| |:||:: |||||||: AACUUAACUUGGUCUGUGAUCUUGCUU ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-78 31 62 CGUGUUUGUUGGUC--CGG-------AGGU- |||| |||||| ||| |||| ACACACACAACCCUCCGCCGAUUCCUUCCAC ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-787 250 284 GCUUUCUAUGAU---------------UUUGCUCGAAU |:||:|: | ||||||| ----UGGUAUUGCGUAUUCAUUCAUAAAUUCGAGCUUC ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-797 80 106 AGAA--GAGUA--ACACUA--ACGACACUAU ||| ||:: |||||| |||| ACUUAACUUGGUCUGUGAUCUUGCUU----- ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-2 76 99 CGUGUAGUUUCGACC-GACACUAu |:| | : || :||| ||||||| GTAAACTTAACTTGGTCTGTGATc ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-239a 218 238 GGUCAUGGAUACACAUCAUGUUu || ||||| :| | ||||:|| CC-GTACCAGT-TCAAGTATAAg ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-249 278 299 cCGUUGCGAGUUUUCAGGACacu || ||:| :|: ||||| aGCTTCGTTGGAGCTTCCTGgc- ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-253 5 28 GG--AAGGGUGU-UGCGGAUGAuu || || ||||| |: ||||:| CCAATTGCCACACATACCTATTtc ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-256 199 220 aUGUCAGAAG-AUACGUAAGGu | | | ||| | ||:||||| aAAATTATTCTTTTGTATTCCg ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-264 29 49 guauUGU-UGUUGGUGGGCGG ||| |||||| :||||| ccacACACACAACCCTCCGCC ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-268 80 104 UGGUUUGACGAAGAU-UAAGAACGg ||: |||| |||: : |||||| ACTTAACTTGGTCTGTGATCTTGCt ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-42 73 93 AGACAUCUACAAUUGGGCCAcu |||||| | |||||::||| TCTGTA-AACTTAACTTGGTct ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-50 4 23 GGGUUCUUAUGGUCUGUAUAGu |||| | |:||| ||||| | CCCA--ATTGCCACACATACCt ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-72 82 105 AGUCGAUACGGUUG-UAGAACGGA |:| || |:| :: |||||||:| TTAACTTGGTCTGTGATCTTGCTT ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-73 80 105 UGACUUGA--CGGAUG-UAGAACGgu ||| |||| |:||:: ||||||| ACTTAACTTGGTCTGTGATCTTGCtt ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-2 92 99 C-GUG-UAGUUUC-----------------GACC-GACACUAU ||| |||| :||| ||||||| UCCACUAUCAUUUUUUUCUGUAAACUUAACUUGGUCUGUGAUC ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-250 92 99 ------------------ACGGUUGUC---AACU-GACACUAA ||: ||| |||: ||||||| UCCACUAUCAUUUUUUUCUGUAAACUUAACUUGGUCUGUGAUC ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-43 92 99 CGCUGUCGU-----------------------UCAUUUGACACUAU :|| ||||||| UCCACUAUCAUUUUUUUCUGUAAACUUAACUUGGU---CUGUGAUC ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-787 276 283 GCUUU-----CUAUGAUUUU---------------GCUCGAAU |:||:|: ||||||| AUUUUCUUUUGGUAUUGCGUAUUCAUUCAUAAAUUCGAGCUUC ubql-1; CELE_F15C11.2; F15C11.2 cel-miR-797 92 99 ----------------AGAA----GAGUAACACUAACGACACUAU ||| ||:| ||:| ||||||| UCCACUAUCAUUUUUUUCUGUAAACUUAACUUGGU--CUGUGAUC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ubql-1 RAID01027182 cel-miR-250-3p miRNA MIMAT0000306 ubql-1 mRNA 172434 Prediction 0.1828 ubql-1 RAID01330218 cel-miR-81-3p miRNA MIMAT0000054 ubql-1 mRNA 172434 Prediction 0.1828 ubql-1 RAID01936174 cel-miR-787-3p miRNA MIMAT0004222 ubql-1 mRNA 172434 Prediction 0.1828 ubql-1 RAID02121556 cel-miR-70-3p miRNA MIMAT0000042 ubql-1 mRNA 172434 Prediction 0.1828 ubql-1 RAID02312934 cel-miR-797-5p miRNA MIMAT0004232 ubql-1 mRNA 172434 Prediction 0.1828 ubql-1 RAID02460911 cel-miR-231-3p miRNA MIMAT0000286 ubql-1 mRNA 172434 Prediction 0.1828 ubql-1 RAID02820769 cel-miR-2-3p miRNA MIMAT0000004 ubql-1 mRNA 172434 Prediction 0.1828 ubql-1 RAID03011319 cel-miR-359 miRNA MIMAT0000701 ubql-1 mRNA 172434 Prediction 0.1828 ubql-1 RAID03023821 cel-miR-58a-3p miRNA MIMAT0000030 ubql-1 mRNA 172434 Prediction 0.1828 ubql-1 RAID03124137 cel-miR-80-3p miRNA MIMAT0000053 ubql-1 mRNA 172434 Prediction 0.1828 ubql-1 RAID03181884 cel-miR-43-3p miRNA MIMAT0000014 ubql-1 mRNA 172434 Prediction 0.1828 ubql-1 RAID03537364 cel-miR-82-3p miRNA MIMAT0000055 ubql-1 mRNA 172434 Prediction 0.1828