iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
ULD/UDP/UFD/PB1	25.84	1.60e+00	30.40	IUUC-Sce-106380

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Arabidopsis thaliana

Functional Description
(View)

Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal.

Protein Sequence
(Fasta)

MCEPDDNSAR NGVTTQPSRS RELLMDVDDL DLDGSWPLDQ IPYLSSSNRM ISPIFVSSSS 60
EQPCSPLWAF SDGGGNGFHH ATSGGDDEKI SSVSGVPSFR LAEYPLFLPY SSPSAAENTT 120

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Nucleotide Sequence
(Fasta)

GAATAATCTA GAATATGTCA AATATCCTTT TATTATTTTG TAGCTGTCGA AACTATGGTG 60
AATAAAATCT CGAGGAATAT ATTAGAAAAC AAAAAAGATC TAGAGGAATA ATAATATTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR029016--GAF_dom-like
IPR009057--Homeobox-like
IPR000270--PB1_dom
IPR003035--RWP-RK_dom

PROSITE

Pfam

SMART

Gene Ontology

GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0003700--F:transcription factor activity, sequence-specific DNA binding
GO:0042128--P:nitrate assimilation
GO:0010167--P:response to nitrate
GO:0009414--P:response to water deprivation
GO:0010118--P:stomatal movement
GO:0006351--P:transcription, DNA-templated

KEGG

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005514	Arabidopsis lyrata	96.56	0.00e+00	1810.00
IUUC-Ago-007743	Ashbya gossypii	24.24	8.00e-04	38.10
IUUC-Ang-009708	Aspergillus niger	27.40	7.00e-03	35.00
IUUC-Ggr-039728	Gaeumannomyces graminis	25.81	2.40e-01	30.80
IUUC-Gma-043954	Glycine max	32.03	2.00e-66	246.00
IUUC-Lma-052955	Leptosphaeria maculans	32.14	2.00e-03	38.10
IUUC-Mpo-057433	Magnaporthe poae	27.12	2.10e-01	31.20
IUUC-Mtr-058322	Medicago truncatula	35.36	2.00e-52	200.00
IUUC-Mla-059044	Melampsora laricipopulina	25.00	2.20e-02	34.30
IUUC-Mvi-060486	Microbotryum violaceum	27.08	1.00e-04	42.00
IUUC-Mac-065665	Musa acuminata	42.39	1.00e-109	389.00
IUUC-Pno-095127	Phaeosphaeria nodorum	33.93	4.00e-04	40.00
IUUC-Pte-104293	Pyrenophora teres	33.33	1.50e-02	35.00
IUUC-Pyt-104722	Pyrenophora triticirepentis	33.33	1.70e-02	34.30
IUUC-Sce-106380	Saccharomyces cerevisiae	25.84	6.00e-03	35.00
IUUC-Smo-109040	Selaginella moellendorffii	38.57	8.00e-66	244.00
IUUC-Sre-115126	Sporisorium reilianum	30.00	4.00e-04	40.00
IUUC-Tvi-122300	Trichoderma virens	22.54	4.80e-01	29.60
IUUC-Uma-129594	Ustilago maydis	25.88	2.00e-03	37.70

Created Date

25-Jun-2017

Functional Description