iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Dre-028369

Ensembl Protein ID

ENSDARP00000107646.1

UniProt Accession

F1R6E5; F1R6E5_DANRE

Genbank Protein ID

ENSDARP00000107646

Protein Name

RAD23 homolog B, nucleotide excision repair protein

Genbank Nucleotide ID

CABZ01079632

Gene Name

rad23b

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000021550.8	ENSDART00000124615.2	ENSDARP00000107646.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.30e-17	64.2	161	198
ULD/UDP/UBQ/UBQ_PIM	1.20e-26	93.3	1	79

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 4    edkleqlveMGFdreealqaLraannnleaAveyLldg 41
           e ++ +++ MG++r++++ aLra++nn+++AveyLl+g
   Q: 161  ENMVTEIMLMGYERDRVVAALRASFNNPDRAVEYLLTG 198
           778999999***************************97 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksks 76
           m++t+ktl++++f+++++ ++tv++lKeki+ e+g   +p++ qkLIyaGkiL+Ddt L+e++i+++++v+++v+k+ks
   Q: 1    MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGkdgFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKS 79
           99**************************************************************************985 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MQITLKTLQQ QTFKIDIDAE ETVKALKEKI ENEKGKDGFP VAGQKLIYAG KILSDDTALK 60
EYKIDEKNFV VVMVTKPKSA SAPAPPSSSS SSSSSTTASA SAAPSAAPVS ESPSEEEKKP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCAGTGTGGC GAAAGGGGGG ACGGGCCGTG GAGTGTTTAT GCGCGTAATG GCGGCGGACA 60
GGCTGTGATG AACCACGGCC AAAAACCCAC AGCCAGCGAT CCAGCCCTCG GTCACTTTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

dre:393536

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000770	Aegilops tauschii	39.34	6.00e-35	141.00
IUUC-Aml-001195	Ailuropoda melanoleuca	68.87	8.00e-74	270.00
IUUC-Atr-003116	Amborella trichopoda	38.93	9.00e-34	137.00
IUUC-Apl-003371	Anas platyrhynchos	67.05	2.00e-73	269.00
IUUC-Aly-006159	Arabidopsis lyrata	36.53	5.00e-56	211.00
IUUC-Ath-006674	Arabidopsis thaliana	41.22	5.00e-41	161.00
IUUC-Ago-007830	Ashbya gossypii	33.97	3.00e-14	73.20
IUUC-Acl-008212	Aspergillus clavatus	38.82	4.00e-28	119.00
IUUC-Afl-008605	Aspergillus flavus	36.11	7.00e-28	118.00
IUUC-Ani-009460	Aspergillus nidulans	38.84	2.00e-31	129.00
IUUC-Aor-010032	Aspergillus oryzae	36.11	6.00e-28	118.00
IUUC-Ate-010458	Aspergillus terreus	39.52	2.00e-31	130.00
IUUC-Bta-012922	Bos taurus	72.40	1.00e-75	276.00
IUUC-Bci-013933	Botrytis cinerea	36.50	3.00e-27	115.00
IUUC-Bdi-014253	Brachypodium distachyon	40.16	5.00e-36	145.00
IUUC-Bol-016493	Brassica oleracea	40.83	5.00e-38	152.00
IUUC-Bra-016970	Brassica rapa	36.27	4.00e-55	208.00
IUUC-Cel-018364	Caenorhabditis elegans	33.04	7.00e-18	84.70
IUUC-Cja-018772	Callithrix jacchus	69.43	7.00e-75	274.00
IUUC-Cfa-020683	Canis familiaris	68.87	5.00e-74	271.00
IUUC-Cpo-022145	Cavia porcellus	71.84	5.00e-73	268.00
IUUC-Csa-023714	Chlorocebus sabaeus	71.98	4.00e-77	281.00
IUUC-Cho-024814	Choloepus hoffmanni	67.10	1.00e-62	233.00
IUUC-Cgl-026495	Colletotrichum gloeosporioides	49.33	4.00e-15	75.50
IUUC-Cne-027056	Cryptococcus neoformans	47.44	1.00e-14	74.70
IUUC-Dno-029543	Dasypus novemcinctus	73.55	5.00e-76	278.00
IUUC-Dor-030358	Dipodomys ordii	63.14	8.00e-65	240.00
IUUC-Ete-032583	Echinops telfairi	60.33	9.00e-52	197.00
IUUC-Eca-034243	Equus caballus	72.40	2.00e-75	276.00
IUUC-Eeu-034721	Erinaceus europaeus	68.89	4.00e-56	211.00
IUUC-Fca-035679	Felis catus	67.90	3.00e-74	272.00
IUUC-Fal-037148	Ficedula albicollis	65.22	2.00e-71	263.00
IUUC-Gmo-039080	Gadus morhua	59.85	7.00e-60	224.00
IUUC-Gga-040544	Gallus gallus	63.30	6.00e-71	261.00
IUUC-Gac-042239	Gasterosteus aculeatus	61.58	3.00e-101	361.00
IUUC-Gma-044370	Glycine max	37.60	8.00e-41	161.00
IUUC-Ggo-045125	Gorilla gorilla	71.98	2.00e-77	282.00
IUUC-Hsa-046519	Homo sapiens	71.98	2.00e-77	282.00
IUUC-Hvu-047832	Hordeum vulgare	39.68	5.00e-36	145.00
IUUC-Itr-048295	Ictidomys tridecemlineatus	71.07	5.00e-72	265.00
IUUC-Kpa-049314	Komagataella pastoris	37.28	9.00e-35	140.00
IUUC-Lch-050553	Latimeria chalumnae	69.57	1.00e-64	240.00
IUUC-Lpe-051087	Leersia perrieri	38.22	6.00e-37	148.00
IUUC-Laf-054293	Loxodonta africana	73.14	4.00e-74	271.00
IUUC-Mcc-055600	Macaca mulatta	71.98	2.00e-76	279.00
IUUC-Mpo-057609	Magnaporthe poae	45.97	4.00e-16	79.00
IUUC-Mtr-058148	Medicago truncatula	37.02	6.00e-42	165.00
IUUC-Mla-058961	Melampsora laricipopulina	47.37	2.00e-25	110.00
IUUC-Mga-060060	Meleagris gallopavo	47.30	8.00e-14	71.20
IUUC-Mmr-061159	Microcebus murinus	72.29	2.00e-75	275.00
IUUC-Mdo-061967	Monodelphis domestica	71.78	6.00e-72	264.00
IUUC-Mmu-063258	Mus musculus	69.60	7.00e-76	277.00
IUUC-Mac-064468	Musa acuminata	35.73	9.00e-57	214.00
IUUC-Mpu-066389	Mustela putorius furo	69.26	3.00e-74	271.00
IUUC-Mlu-067999	Myotis lucifugus	72.54	1.00e-74	273.00
IUUC-Nle-069655	Nomascus leucogenys	71.98	2.00e-77	282.00
IUUC-Opr-070234	Ochotona princeps	92.86	5.00e-25	108.00
IUUC-Ocu-074831	Oryctolagus cuniculus	72.84	3.00e-73	268.00
IUUC-Oba-075392	Oryza barthii	37.05	5.00e-35	142.00
IUUC-Obr-076909	Oryza brachyantha	33.16	7.00e-49	187.00
IUUC-Ogu-078883	Oryza glumaepatula	37.05	5.00e-35	142.00
IUUC-Oin-079817	Oryza indica	36.82	6.00e-35	141.00
IUUC-Olo-080929	Oryza longistaminata	36.82	4.00e-35	142.00
IUUC-Ome-081866	Oryza meridionalis	36.82	4.00e-35	142.00
IUUC-Oni-083092	Oryza nivara	36.82	6.00e-35	141.00
IUUC-Opu-083756	Oryza punctata	35.98	2.00e-35	143.00
IUUC-Oru-084816	Oryza rufipogon	36.82	6.00e-35	141.00
IUUC-Osa-086112	Oryza sativa	36.82	6.00e-35	141.00
IUUC-Ola-086540	Oryzias latipes	61.42	3.00e-66	246.00
IUUC-Oga-088023	Otolemur garnettii	68.77	6.00e-75	274.00
IUUC-Oar-089964	Ovis aries	72.31	4.00e-75	275.00
IUUC-Ptr-091165	Pan troglodytes	71.98	6.00e-77	281.00
IUUC-Pan-092009	Papio anubis	71.15	1.00e-75	276.00
IUUC-Psi-093477	Pelodiscus sinensis	69.02	8.00e-66	244.00
IUUC-Ppa-095654	Physcomitrella patens	40.08	5.00e-38	151.00
IUUC-Pfo-097385	Poecilia formosa	64.00	2.00e-75	276.00
IUUC-Pab-097868	Pongo abelii	71.98	2.00e-76	279.00
IUUC-Pop-099642	Populus trichocarpa	38.46	2.00e-40	160.00
IUUC-Pca-100348	Procavia capensis	64.41	6.00e-66	244.00
IUUC-Ppe-101368	Prunus persica	35.57	9.00e-53	200.00
IUUC-Pva-102137	Pteropus vampyrus	70.93	6.00e-77	281.00
IUUC-Pgr-103641	Puccinia graminis	37.64	2.00e-25	110.00
IUUC-Pte-104303	Pyrenophora teres	51.11	2.00e-20	93.60
IUUC-Pyt-104580	Pyrenophora triticirepentis	51.52	3.00e-20	92.80
IUUC-Rno-104844	Rattus norvegicus	69.85	5.00e-76	278.00
IUUC-Sce-106214	Saccharomyces cerevisiae	34.31	1.00e-13	71.20
IUUC-Sha-107073	Sarcophilus harrisii	71.78	4.00e-72	265.00
IUUC-Sja-107851	Schizosaccharomyces japonicus	42.34	7.00e-38	151.00
IUUC-Smo-109518	Selaginella moellendorffii	37.05	2.00e-28	120.00
IUUC-Sit-109813	Setaria italica	37.86	4.00e-39	155.00
IUUC-Sar-112925	Sorex araneus	71.86	2.00e-67	249.00
IUUC-Sbi-114459	Sorghum bicolor	36.40	5.00e-40	158.00
IUUC-Ssc-116329	Sus scrofa	68.13	1.00e-75	276.00
IUUC-Tgu-116918	Taeniopygia guttata	63.12	3.00e-72	265.00
IUUC-Tsy-118836	Tarsius syrichta	86.03	2.00e-44	173.00
IUUC-Tca-121594	Theobroma cacao	34.59	4.00e-52	198.00
IUUC-Tur-126610	Triticum urartu	39.34	3.00e-35	143.00
IUUC-Tme-127092	Tuber melanosporum	40.80	1.00e-23	104.00
IUUC-Tbe-127493	Tupaia belangeri	60.33	7.00e-49	187.00
IUUC-Ttr-128464	Tursiops truncatus	67.77	1.00e-75	276.00
IUUC-Vda-129946	Verticillium dahliae	47.29	1.00e-18	87.80
IUUC-Vpa-130357	Vicugna pacos	68.29	2.00e-48	186.00
IUUC-Vvi-131039	Vitis vinifera	40.74	5.00e-44	171.00
IUUC-Xtr-132679	Xenopus tropicalis	69.92	8.00e-60	224.00
IUUC-Xma-133503	Xiphophorus maculatus	62.75	3.00e-75	275.00
IUUC-Yli-134615	Yarrowia lipolytica	42.92	1.00e-38	154.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence