iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s15740	POPTR_0005s15740.2	POPTR_0005s15740.2
POPTR_0005s15740	POPTR_0005s15740.1	POPTR_0005s15740.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.30e-23	83.4	173	214
ULD/UDP/UBQ/UBQ_PIM	5.70e-25	88.2	1	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           +e  ++q+ +MG   ++re++++aLraa+nn+e+AveyL++g
   Q: 173  LEATIQQILDMGggsWNRETVVRALRAAFNNPERAVEYLYSG 214
           5778***********************************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mk++vktlkg++fe+ev+++dtv e+K++i+ ++g   +p++qq LIy+Gk+LkDdttL e ++ ++s+++++++ksk
   Q: 1    MKVFVKTLKGTNFEIEVKPEDTVVEVKKNIENVQGadvYPAAQQMLIYQGKVLKDDTTLDESKVAENSFIVVMLSKSK 78
           99*************************************************************************987 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MKVFVKTLKG TNFEIEVKPE DTVVEVKKNI ENVQGADVYP AAQQMLIYQG KVLKDDTTLD 60
ESKVAENSFI VVMLSKSKVS SGGPSTATAA PPNSKVSSGG PSTATAAPPT LAQPTSSLPS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AATTTCTCAT CGACTCCTAC TTTGCCTCTT CCTCTACTCT CTTTCTCTCT ATCCGGCGGC 60
CACCGGAGAT CAGTGTTCAC CCGCCGGAGA GGAATAATCG ACTATTATTC GGATTCAAGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0005s15740g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000770	Aegilops tauschii	66.26	2.00e-84	305.00
IUUC-Aml-001195	Ailuropoda melanoleuca	38.04	2.00e-29	122.00
IUUC-Apl-003371	Anas platyrhynchos	35.20	1.00e-39	156.00
IUUC-Aca-004704	Anolis carolinensis	35.64	2.00e-41	162.00
IUUC-Aly-005498	Arabidopsis lyrata	82.33	4.00e-107	380.00
IUUC-Ath-006688	Arabidopsis thaliana	78.78	1.00e-103	369.00
IUUC-Ago-007830	Ashbya gossypii	29.82	2.00e-15	76.60
IUUC-Ame-011107	Astyanax mexicanus	40.93	1.00e-25	110.00
IUUC-Bgr-012056	Blumeria graminis	33.90	4.00e-36	145.00
IUUC-Bta-012377	Bos taurus	34.08	4.00e-43	168.00
IUUC-Bci-013933	Botrytis cinerea	34.53	1.00e-35	143.00
IUUC-Bdi-014253	Brachypodium distachyon	67.90	7.00e-86	310.00
IUUC-Bol-016493	Brassica oleracea	79.34	4.00e-102	364.00
IUUC-Bra-017983	Brassica rapa	65.01	3.00e-131	461.00
IUUC-Cja-018946	Callithrix jacchus	33.58	7.00e-40	157.00
IUUC-Cfa-020577	Canis familiaris	33.58	2.00e-42	166.00
IUUC-Cpo-021850	Cavia porcellus	35.78	1.00e-50	192.00
IUUC-Csa-023714	Chlorocebus sabaeus	35.17	1.00e-32	133.00
IUUC-Csv-025823	Ciona savignyi	28.53	1.00e-20	93.20
IUUC-Cne-027056	Cryptococcus neoformans	41.23	1.00e-12	67.00
IUUC-Cme-027260	Cyanidioschyzon merolae	27.29	8.00e-27	114.00
IUUC-Dre-028369	Danio rerio	34.57	2.00e-47	182.00
IUUC-Dno-029543	Dasypus novemcinctus	37.40	1.00e-31	130.00
IUUC-Dme-032027	Drosophila melanogaster	30.51	2.00e-43	169.00
IUUC-Eeu-034721	Erinaceus europaeus	34.93	3.00e-20	92.40
IUUC-Fca-036051	Felis catus	34.00	4.00e-45	174.00
IUUC-Fal-037148	Ficedula albicollis	31.59	6.00e-38	150.00
IUUC-Gga-040544	Gallus gallus	34.81	3.00e-42	165.00
IUUC-Gac-042298	Gasterosteus aculeatus	34.18	7.00e-43	167.00
IUUC-Ggo-045125	Gorilla gorilla	36.96	3.00e-31	129.00
IUUC-Hsa-046519	Homo sapiens	36.96	3.00e-31	129.00
IUUC-Hvu-047832	Hordeum vulgare	66.80	9.00e-86	309.00
IUUC-Lch-050553	Latimeria chalumnae	39.56	8.00e-28	117.00
IUUC-Lpe-051087	Leersia perrieri	68.40	8.00e-94	336.00
IUUC-Loc-051758	Lepisosteus oculatus	34.25	7.00e-45	174.00
IUUC-Mtr-058148	Medicago truncatula	69.04	2.00e-144	504.00
IUUC-Mmr-061759	Microcebus murinus	37.29	1.00e-28	120.00
IUUC-Mdo-062742	Monodelphis domestica	35.71	1.00e-53	202.00
IUUC-Mmu-063258	Mus musculus	36.50	9.00e-34	137.00
IUUC-Mac-064724	Musa acuminata	68.54	4.00e-143	500.00
IUUC-Mpu-066684	Mustela putorius furo	34.08	1.00e-42	166.00
IUUC-Mlu-067787	Myotis lucifugus	35.56	9.00e-49	186.00
IUUC-Ncr-068685	Neurospora crassa	37.13	2.00e-30	125.00
IUUC-Nle-069655	Nomascus leucogenys	35.59	2.00e-31	129.00
IUUC-Opr-070234	Ochotona princeps	50.94	2.00e-10	59.70
IUUC-Ont-072484	Oreochromis niloticus	36.47	9.00e-53	200.00
IUUC-Oan-073572	Ornithorhynchus anatinus	34.73	1.00e-47	182.00
IUUC-Oba-075951	Oryza barthii	58.95	7.00e-111	393.00
IUUC-Ogl-077152	Oryza glaberrima	58.95	7.00e-111	393.00
IUUC-Ogu-078883	Oryza glumaepatula	65.32	2.00e-88	318.00
IUUC-Oin-079817	Oryza indica	64.92	6.00e-88	317.00
IUUC-Olo-080929	Oryza longistaminata	64.92	8.00e-88	316.00
IUUC-Ome-081866	Oryza meridionalis	65.32	2.00e-88	318.00
IUUC-Oni-083092	Oryza nivara	64.92	6.00e-88	317.00
IUUC-Opu-083756	Oryza punctata	66.53	8.00e-91	326.00
IUUC-Oru-084816	Oryza rufipogon	64.92	6.00e-88	317.00
IUUC-Osa-086112	Oryza sativa	64.92	6.00e-88	317.00
IUUC-Olu-087843	Ostreococcus lucimarinus	44.67	1.00e-43	169.00
IUUC-Ptr-091165	Pan troglodytes	36.96	4.00e-31	128.00
IUUC-Pan-092009	Papio anubis	36.92	8.00e-30	124.00
IUUC-Psi-093477	Pelodiscus sinensis	38.63	2.00e-26	113.00
IUUC-Ppa-095654	Physcomitrella patens	68.60	8.00e-83	300.00
IUUC-Pab-097738	Pongo abelii	34.20	2.00e-40	158.00
IUUC-Pca-100348	Procavia capensis	33.50	3.00e-43	168.00
IUUC-Ppe-101830	Prunus persica	69.55	6.00e-130	456.00
IUUC-Pva-102412	Pteropus vampyrus	33.50	5.00e-40	157.00
IUUC-Rno-105569	Rattus norvegicus	34.01	7.00e-44	170.00
IUUC-Sha-106918	Sarcophilus harrisii	34.81	2.00e-41	162.00
IUUC-Spo-108298	Schizosaccharomyces pombe	33.09	3.00e-42	165.00
IUUC-Sit-110235	Setaria italica	66.67	2.00e-81	295.00
IUUC-Sly-111899	Solanum lycopersicum	70.02	2.00e-152	531.00
IUUC-Stu-112027	Solanum tuberosum	72.48	2.00e-156	544.00
IUUC-Sbi-113871	Sorghum bicolor	56.86	2.00e-110	391.00
IUUC-Ssc-115460	Sus scrofa	34.47	1.00e-45	176.00
IUUC-Tgu-116918	Taeniopygia guttata	35.36	3.00e-49	188.00
IUUC-Tru-118651	Takifugu rubripes	33.17	2.00e-44	172.00
IUUC-Tni-120493	Tetraodon nigroviridis	37.98	2.00e-50	192.00
IUUC-Tre-121911	Trichoderma reesei	38.46	2.00e-27	115.00
IUUC-Tae-125354	Triticum aestivum	65.84	2.00e-85	308.00
IUUC-Tur-126610	Triticum urartu	67.49	7.00e-85	307.00
IUUC-Vpa-130357	Vicugna pacos	34.58	2.00e-16	79.70
IUUC-Vvi-131039	Vitis vinifera	85.19	4.00e-117	414.00
IUUC-Xma-133503	Xiphophorus maculatus	32.85	5.00e-52	197.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence