iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cne-026913

Ensembl Protein ID

AAW40841

UniProt Accession

P40909; P04838; P61863; Q5KPC3; RL40_CRYNJ

Genbank Protein ID

AAA82979.1; AAW40841.1

Protein Name

Ubiquitin-60S ribosomal protein L40; Ubiquitin; 60S ribosomal protein L40; CEP52; CEP53

Genbank Nucleotide ID

U16992; AE017341

Gene Name

UBI1; CNA03330

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CNA03330	AAW40841	AAW40841

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/NEDD8	8.90e-42	139.7	1	76
ULD/UDP/UBQ/UBQ_PIM	4.30e-29	98.7	1	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e+sdti+++k ++++keGiPP+qqrli+aGkqled++t++dyn++k+s+LhLvL+LrGG
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
           89*************************************************************************9 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dt+ ++K ki+++ g+pp+qq+LI+aGk+L+D +tLs+++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
           99********************************************************************986 PP

Organism

Cryptococcus neoformans

Functional Description
(View)

Ribosomal protein L40 is part of the 60S ribosomal subunit.

Protein Sequence
(Fasta)

MQIFVKTLTG KTITLEVESS DTIDNVKSKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN 60
IQKESTLHLV LRLRGGIIEP SLKALASKYN CEKQICRKCY ARLPPRATNC RKRKCGHSSQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGAGTTTGCA GGACAGTCAA GGTGAGTGTA GTCCCTACAG ACTCAAACCC TCCAGTTCGT 60
CAATACTGAT AAGGATCTTT GTTTTACAGA TGCAGATTTT CGTCAAGACG TATGTCCCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
KW-0832--Ubl conjugation

Interpro

IPR001975--Ribosomal_L40e
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF01020--Ribosomal_L40e
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM01377--Ribosomal_L40e
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0005840--C:ribosome
GO:0003735--F:structural constituent of ribosome
GO:0006412--P:translation

KEGG

cne:CNA03330

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001006	Aegilops tauschii	59.60	3.00e-45	171.00
IUUC-Aml-001246	Ailuropoda melanoleuca	86.72	8.00e-64	233.00
IUUC-Atr-003081	Amborella trichopoda	69.77	1.00e-42	162.00
IUUC-Ath-007098	Arabidopsis thaliana	88.28	3.00e-64	234.00
IUUC-Ago-007932	Ashbya gossypii	94.53	9.00e-70	253.00
IUUC-Acl-008350	Aspergillus clavatus	87.22	1.00e-65	239.00
IUUC-Afl-008554	Aspergillus flavus	93.75	1.00e-69	253.00
IUUC-Afu-008984	Aspergillus fumigatus	93.75	1.00e-68	249.00
IUUC-Ang-009609	Aspergillus niger	93.75	4.00e-69	250.00
IUUC-Aor-009991	Aspergillus oryzae	92.13	2.00e-67	245.00
IUUC-Ate-010252	Aspergillus terreus	93.60	9.00e-68	248.00
IUUC-Ame-010785	Astyanax mexicanus	87.23	1.00e-46	175.00
IUUC-Bgr-012115	Blumeria graminis	90.40	2.00e-65	239.00
IUUC-Bta-013360	Bos taurus	86.72	8.00e-64	233.00
IUUC-Bci-013851	Botrytis cinerea	92.97	7.00e-69	249.00
IUUC-Bdi-014499	Brachypodium distachyon	89.84	1.00e-65	239.00
IUUC-Bol-015961	Brassica oleracea	89.06	6.00e-65	236.00
IUUC-Cel-018677	Caenorhabditis elegans	89.84	3.00e-66	241.00
IUUC-Cja-019572	Callithrix jacchus	86.72	8.00e-64	233.00
IUUC-Cfa-020339	Canis familiaris	86.72	8.00e-64	233.00
IUUC-Cpo-021534	Cavia porcellus	86.72	8.00e-64	233.00
IUUC-Cre-022567	Chlamydomonas reinhardtii	88.28	3.00e-64	234.00
IUUC-Csa-023398	Chlorocebus sabaeus	86.72	8.00e-64	233.00
IUUC-Cho-024788	Choloepus hoffmanni	55.26	4.00e-17	76.60
IUUC-Cin-025266	Ciona intestinalis	86.72	4.00e-64	234.00
IUUC-Csv-026105	Ciona savignyi	86.61	6.00e-64	233.00
IUUC-Cgl-026502	Colletotrichum gloeosporioides	94.40	3.00e-67	247.00
IUUC-Cme-027344	Cyanidioschyzon merolae	93.41	4.00e-46	174.00
IUUC-Dre-028761	Danio rerio	88.28	1.00e-64	236.00
IUUC-Dno-028899	Dasypus novemcinctus	86.72	4.00e-63	231.00
IUUC-Dme-031588	Drosophila melanogaster	88.28	1.00e-64	236.00
IUUC-Ete-033120	Echinops telfairi	86.72	8.00e-64	233.00
IUUC-Eca-033787	Equus caballus	86.72	8.00e-64	233.00
IUUC-Fca-035725	Felis catus	86.72	8.00e-64	233.00
IUUC-Fox-037870	Fusarium oxysporum	94.53	2.00e-69	251.00
IUUC-Fso-038461	Fusarium solani	100.00	6.00e-43	162.00
IUUC-Gmo-039163	Gadus morhua	87.50	2.00e-64	235.00
IUUC-Ggr-040034	Gaeumannomyces graminis	94.53	1.00e-69	253.00
IUUC-Gga-040909	Gallus gallus	85.16	3.00e-63	231.00
IUUC-Gac-041640	Gasterosteus aculeatus	87.50	2.00e-64	234.00
IUUC-Gma-043254	Glycine max	89.06	2.00e-65	239.00
IUUC-Ggo-045411	Gorilla gorilla	86.72	8.00e-64	233.00
IUUC-Hsa-046609	Homo sapiens	67.88	3.00e-48	181.00
IUUC-Hvu-047579	Hordeum vulgare	69.12	2.00e-50	189.00
IUUC-Itr-048586	Ictidomys tridecemlineatus	86.72	2.00e-64	236.00
IUUC-Kpa-049279	Komagataella pastoris	94.53	2.00e-69	252.00
IUUC-Lch-049971	Latimeria chalumnae	87.50	1.00e-64	237.00
IUUC-Lpe-051472	Leersia perrieri	82.44	6.00e-52	196.00
IUUC-Loc-052117	Lepisosteus oculatus	87.50	2.00e-64	235.00
IUUC-Lma-053049	Leptosphaeria maculans	93.75	7.00e-69	249.00
IUUC-Laf-054284	Loxodonta africana	86.72	2.00e-64	236.00
IUUC-Mcc-055710	Macaca mulatta	85.38	7.00e-63	231.00
IUUC-Meu-056411	Macropus eugenii	86.72	8.00e-64	233.00
IUUC-Mor-057008	Magnaporthe oryzae	96.09	3.00e-70	254.00
IUUC-Mpo-057360	Magnaporthe poae	94.53	2.00e-69	252.00
IUUC-Mtr-058437	Medicago truncatula	89.06	8.00e-65	236.00
IUUC-Mla-059080	Melampsora laricipopulina	93.00	2.00e-51	192.00
IUUC-Mmr-061335	Microcebus murinus	81.25	1.00e-57	212.00
IUUC-Mdo-062752	Monodelphis domestica	86.72	8.00e-64	233.00
IUUC-Mmu-063548	Mus musculus	86.72	2.00e-64	236.00
IUUC-Mac-065626	Musa acuminata	89.84	2.00e-65	238.00
IUUC-Mpu-066513	Mustela putorius furo	86.72	8.00e-64	233.00
IUUC-Mlu-068010	Myotis lucifugus	85.16	2.00e-62	228.00
IUUC-Nfi-068358	Neosartorya fischeri	93.65	9.00e-68	246.00
IUUC-Ncr-068799	Neurospora crassa	93.75	8.00e-69	249.00
IUUC-Opr-070655	Ochotona princeps	86.72	8.00e-64	233.00
IUUC-Ont-072180	Oreochromis niloticus	88.00	3.00e-63	231.00
IUUC-Oan-073196	Ornithorhynchus anatinus	86.72	8.00e-64	233.00
IUUC-Oba-075092	Oryza barthii	89.06	4.00e-65	237.00
IUUC-Obr-076156	Oryza brachyantha	89.06	5.00e-65	237.00
IUUC-Ogl-077471	Oryza glaberrima	89.06	4.00e-65	237.00
IUUC-Ogu-078259	Oryza glumaepatula	89.06	4.00e-65	237.00
IUUC-Oin-079901	Oryza indica	89.06	4.00e-65	237.00
IUUC-Ome-081343	Oryza meridionalis	89.06	4.00e-65	237.00
IUUC-Oni-082301	Oryza nivara	82.18	4.00e-35	138.00
IUUC-Opu-083839	Oryza punctata	66.67	5.00e-36	143.00
IUUC-Oru-085252	Oryza rufipogon	89.06	4.00e-65	237.00
IUUC-Osa-085747	Oryza sativa	81.06	2.00e-51	192.00
IUUC-Ola-086333	Oryzias latipes	87.50	2.00e-64	234.00
IUUC-Olu-087819	Ostreococcus lucimarinus	82.03	4.00e-61	224.00
IUUC-Oga-088027	Otolemur garnettii	86.72	8.00e-64	233.00
IUUC-Oar-090419	Ovis aries	86.72	8.00e-64	233.00
IUUC-Ptr-091593	Pan troglodytes	86.72	8.00e-64	233.00
IUUC-Pan-091806	Papio anubis	84.38	2.00e-60	222.00
IUUC-Psi-093654	Pelodiscus sinensis	86.72	8.00e-64	233.00
IUUC-Ppa-095174	Physcomitrella patens	89.84	2.00e-65	238.00
IUUC-Pfo-096492	Poecilia formosa	87.50	3.00e-64	234.00
IUUC-Pab-098004	Pongo abelii	86.72	8.00e-64	233.00
IUUC-Pop-098929	Populus trichocarpa	89.84	2.00e-65	238.00
IUUC-Ppe-101497	Prunus persica	89.06	7.00e-65	236.00
IUUC-Pva-102945	Pteropus vampyrus	86.72	8.00e-64	233.00
IUUC-Pgr-103268	Puccinia graminis	93.75	3.00e-69	252.00
IUUC-Ptt-103804	Puccinia triticina	94.06	7.00e-54	200.00
IUUC-Pte-104101	Pyrenophora teres	92.19	5.00e-68	248.00
IUUC-Pyt-104639	Pyrenophora triticirepentis	92.19	9.00e-68	246.00
IUUC-Rno-105290	Rattus norvegicus	86.72	8.00e-64	233.00
IUUC-Sce-106249	Saccharomyces cerevisiae	94.53	1.00e-69	252.00
IUUC-Sha-106570	Sarcophilus harrisii	86.72	8.00e-64	233.00
IUUC-Sja-107834	Schizosaccharomyces japonicus	95.31	7.00e-70	253.00
IUUC-Spo-108045	Schizosaccharomyces pombe	96.09	2.00e-70	254.00
IUUC-Ssl-108670	Sclerotinia sclerotiorum	93.75	3.00e-69	251.00
IUUC-Sit-110085	Setaria italica	88.80	2.00e-64	236.00
IUUC-Sly-111884	Solanum lycopersicum	89.84	2.00e-65	238.00
IUUC-Stu-112385	Solanum tuberosum	90.91	2.00e-62	229.00
IUUC-Sar-112942	Sorex araneus	88.28	1.00e-64	236.00
IUUC-Sbi-114790	Sorghum bicolor	88.28	2.00e-64	235.00
IUUC-Sre-114908	Sporisorium reilianum	95.31	9.00e-70	253.00
IUUC-Ssc-116417	Sus scrofa	86.72	8.00e-64	233.00
IUUC-Tru-117557	Takifugu rubripes	87.50	3.00e-64	234.00
IUUC-Tni-119715	Tetraodon nigroviridis	87.50	3.00e-64	234.00
IUUC-Tca-121404	Theobroma cacao	89.06	6.00e-65	237.00
IUUC-Tvi-122611	Trichoderma virens	92.97	8.00e-69	249.00
IUUC-Tae-125373	Triticum aestivum	73.25	2.00e-60	223.00
IUUC-Tur-126527	Triticum urartu	89.84	1.00e-65	239.00
IUUC-Tme-127138	Tuber melanosporum	95.20	2.00e-68	249.00
IUUC-Ttr-128939	Tursiops truncatus	86.72	8.00e-64	233.00
IUUC-Uma-129619	Ustilago maydis	95.31	9.00e-70	253.00
IUUC-Vda-129775	Verticillium dahliae	94.44	3.00e-68	248.00
IUUC-Vvi-131414	Vitis vinifera	89.06	6.00e-65	236.00
IUUC-Xtr-131921	Xenopus tropicalis	86.72	8.00e-64	233.00
IUUC-Xma-134071	Xiphophorus maculatus	87.50	3.00e-64	234.00
IUUC-Yli-134671	Yarrowia lipolytica	95.31	9.00e-70	253.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence