iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006926

UUCD1 version

UUC-ArT-00332

Ensembl Protein ID

AT4G21350.1

UniProt Accession

O81902; A3RCC8; A7Y5W2; PUB8_ARATH

Genbank Protein ID

ABN05290.1; ABV21211.1; CAA20200.1; CAB79134.1; AEE84444.1

Protein Name

U-box domain-containing protein 8; Plant U-box protein 8; RING-type E3 ubiquitin transferase PUB8

Genbank Nucleotide ID

EF182720; EF637083; AL031187; AL161554; CP002687

Gene Name

PUB8; B80; At4g21350; T6K22.80

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G21350	AT4G21350.1	AT4G21350.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.70e-28	99.3	5	74

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedl.vPnltlrrliqawce 70
           +p +f+CpIsle+M+dPv+l+sG+t+dr sI++w++sg++tcP+t+ pl+e+   +Pn++lr+li ++ +
   Q: 5    LPNDFRCPISLEIMSDPVILQSGHTFDRVSIQQWIDSGNRTCPITKLPLSETPYlIPNHALRSLILNFAH 74
           799**********************************************888766**********99876 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase (By similarity). Involved in the age-dependent pseudo-self-compatibility process.

Protein Sequence
(Fasta)

MAFDLPNDFR CPISLEIMSD PVILQSGHTF DRVSIQQWID SGNRTCPITK LPLSETPYLI 60
PNHALRSLIL NFAHVSLKES SRPRTQQEHS HSQSQALIST LVSQSSSNAS KLESLTRLVR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCTTTG ATTTACCAAA CGATTTCAGA TGCCCGATCT CCCTTGAGAT CATGTCCGAC 60
CCAGTTATCC TCCAATCGGG TCATACTTTC GATCGGGTCT CTATCCAACA ATGGATTGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0016567--P:protein ubiquitination

KEGG

ath:AT4G21350

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002776	Amborella trichopoda	47.81	8.00e-65	239.00
IUUC-Aly-006175	Arabidopsis lyrata	94.65	0.00e+00	669.00
IUUC-Bol-015331	Brassica oleracea	81.82	3.00e-151	527.00
IUUC-Bra-017717	Brassica rapa	87.97	1.00e-141	495.00
IUUC-Gma-043375	Glycine max	60.05	3.00e-92	330.00
IUUC-Mtr-058590	Medicago truncatula	58.09	2.00e-102	365.00
IUUC-Opu-084129	Oryza punctata	40.82	2.00e-31	129.00
IUUC-Pop-099846	Populus trichocarpa	62.10	1.00e-114	405.00
IUUC-Ppe-101638	Prunus persica	60.98	2.00e-119	421.00
IUUC-Sit-110168	Setaria italica	44.20	6.00e-44	170.00
IUUC-Sly-111598	Solanum lycopersicum	57.53	4.00e-97	347.00
IUUC-Stu-112509	Solanum tuberosum	57.68	7.00e-95	339.00
IUUC-Tca-121293	Theobroma cacao	66.94	6.00e-130	456.00
IUUC-Tae-124445	Triticum aestivum	43.53	3.00e-54	204.00
IUUC-Vvi-131324	Vitis vinifera	64.50	6.00e-120	423.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence