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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-105614
UUCD1 version UUC-RaN-00706
Ensembl Protein ID ENSRNOP00000010463.3
UniProt Accession G3V702; G3V702_RAT
Genbank Protein ID EDL98642.1
Protein Name Smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans); WD40 repeat-containing protein SMU1
Genbank Nucleotide ID AC119348
Gene Name Smu1; rCG_54787
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000007671.4 ENSRNOT00000010464.4 ENSRNOP00000010463.3
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNATRANSFACmiRNAMapRAID2
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 3.70e-35 118.8 265 300
UBD/Beta-Prp 1.00e-55 189.4 213 512
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 4    dsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           d v c++f  d  +l++G+ Dg+ikvW + +g +l+
   Q: 265  DAVLCMCFsRDtEMLATGAQDGKIKVWKIQSGQCLR 300
           6799*****777********************9986 PP
   

   UBD/Beta-Prp
   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrsl.sgheae.......vtavkfspdgkilvtgseDrtikvwdlstgkcvht 89
           +ks + c  fspd+++l+tgs dg i+vw++ttgk  + l ++ ++        v +++fs+d+++l+tg++D+ ikvw +++g+c++ 
   Q: 213  QKSHVECARFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLkYQAQDNfmmmddaVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRR 301
           678899******************************666644444446666666*********************************** PP
   S: 90   lk.ghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl.. 175
           ++ +h++ v++lsfs++++ ++s+s d+tir+  l++g+ l+  ++gh+++vn +++ +dg +++s+s D+tv++W++kt ++  t+  
   Q: 302  FErAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLK-EFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFks 389
           *989**************************************.********************************************88 PP
   S: 176  ...tgghtdsvysls.fdsngkelvsgsldgtvklwdlqtgecvrtlnght...dnvksvrfspnderlvsgssDgsiriWdlrsgdll 257
              t g +  v+s++ + +n +++v + + +tv + ++q g++vr++   +     + + ++sp++e+++++++D +++++ + +g+l 
   Q: 390  lgsTAGTDITVNSVIlLPKNPEHFVVCNRSNTVVIMNMQ-GQIVRSFSSGKregGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLE 477
           887555777778887666666*****************5.66888888766566566678999************************** PP
   S: 258  ktlqlhnssvisvavlsfgdnvlvlgsedskvniwk 293
           +tl+ h++ vi +a+ ++ +n +++ sed+ +++wk
   Q: 478  RTLTVHEKDVIGIAH-HPHQNLIATYSEDGLLKLWK 512
           ***************.*******************8 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MSIEIESSDV IRLIMQYLKE NSLHRALATL QEETTVSLNT VDSIESFVAD INSGHWDTVL 60
QAIQSLKLPD KTLIDLYEQV VLELIELREL GAARSLLRQT DPMIMLKQTQ PERYIHLENL 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105614|E3,WD_repeat;UBD,Beta-Prp|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGGCCGCCGG AGGTGTCGCG CGGTGTTGTG CGACCGGCTG TGTGCTGAGT GGGGCCTAGA 60
CCCGGAGCGT TACCGCTATG TCGATCGAAA TCGAGTCTTC CGAGTGAGTC CTGCCGTGGC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105614|E3,WD_repeat;UBD,Beta-Prp|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR006595--CTLH_C
IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000857 Aegilops tauschii 60.27 9.00e-49 185.00
IUUC-Aml-001330 Ailuropoda melanoleuca 100.00 0.00e+00 1071.00
IUUC-Atr-002570 Amborella trichopoda 66.21 0.00e+00 724.00
IUUC-Apl-003826 Anas platyrhynchos 99.19 0.00e+00 1027.00
IUUC-Aca-005183 Anolis carolinensis 99.22 0.00e+00 1064.00
IUUC-Aly-005632 Arabidopsis lyrata 64.72 0.00e+00 720.00
IUUC-Ath-007219 Arabidopsis thaliana 64.72 0.00e+00 715.00
IUUC-Ame-011374 Astyanax mexicanus 95.91 0.00e+00 1042.00
IUUC-Bta-012890 Bos taurus 100.00 0.00e+00 1071.00
IUUC-Bdi-014061 Brachypodium distachyon 65.04 0.00e+00 728.00
IUUC-Bol-016332 Brassica oleracea 65.04 0.00e+00 722.00
IUUC-Bra-017612 Brassica rapa 64.91 0.00e+00 723.00
IUUC-Cel-018238 Caenorhabditis elegans 62.04 0.00e+00 678.00
IUUC-Cja-019336 Callithrix jacchus 100.00 0.00e+00 1071.00
IUUC-Cfa-021108 Canis familiaris 99.81 0.00e+00 1070.00
IUUC-Cpo-022052 Cavia porcellus 100.00 0.00e+00 1071.00
IUUC-Cre-022595 Chlamydomonas reinhardtii 59.77 0.00e+00 658.00
IUUC-Csa-023488 Chlorocebus sabaeus 100.00 0.00e+00 1071.00
IUUC-Cho-025010 Choloepus hoffmanni 89.86 0.00e+00 944.00
IUUC-Cin-025251 Ciona intestinalis 82.10 0.00e+00 901.00
IUUC-Csv-026092 Ciona savignyi 75.66 0.00e+00 827.00
IUUC-Dre-027382 Danio rerio 95.71 0.00e+00 1034.00
IUUC-Dno-029007 Dasypus novemcinctus 99.81 0.00e+00 1071.00
IUUC-Dor-030180 Dipodomys ordii 86.51 0.00e+00 697.00
IUUC-Dme-031762 Drosophila melanogaster 77.97 0.00e+00 869.00
IUUC-Ete-032933 Echinops telfairi 99.77 0.00e+00 892.00
IUUC-Eca-033864 Equus caballus 100.00 0.00e+00 1054.00
IUUC-Eeu-034635 Erinaceus europaeus 89.36 0.00e+00 788.00
IUUC-Fca-036119 Felis catus 100.00 0.00e+00 1071.00
IUUC-Fal-037396 Ficedula albicollis 99.60 0.00e+00 1042.00
IUUC-Gmo-038962 Gadus morhua 93.37 0.00e+00 1019.00
IUUC-Gga-040134 Gallus gallus 99.61 0.00e+00 1069.00
IUUC-Gac-041630 Gasterosteus aculeatus 93.76 0.00e+00 1019.00
IUUC-Gma-043928 Glycine max 66.21 0.00e+00 734.00
IUUC-Ggo-045061 Gorilla gorilla 99.61 0.00e+00 1066.00
IUUC-Hsa-046215 Homo sapiens 100.00 0.00e+00 1071.00
IUUC-Hvu-047799 Hordeum vulgare 66.67 5.00e-148 516.00
IUUC-Itr-048826 Ictidomys tridecemlineatus 100.00 0.00e+00 1071.00
IUUC-Lch-050209 Latimeria chalumnae 92.02 0.00e+00 976.00
IUUC-Lpe-050740 Leersia perrieri 65.23 0.00e+00 726.00
IUUC-Loc-052739 Lepisosteus oculatus 88.82 0.00e+00 954.00
IUUC-Laf-053895 Loxodonta africana 99.81 0.00e+00 1067.00
IUUC-Mcc-055183 Macaca mulatta 100.00 0.00e+00 1071.00
IUUC-Mtr-057730 Medicago truncatula 65.23 0.00e+00 712.00
IUUC-Mga-059222 Meleagris gallopavo 99.52 0.00e+00 881.00
IUUC-Mmr-061749 Microcebus murinus 99.03 0.00e+00 1057.00
IUUC-Mdo-062920 Monodelphis domestica 99.61 0.00e+00 1069.00
IUUC-Mmu-063228 Mus musculus 100.00 0.00e+00 1071.00
IUUC-Mac-065084 Musa acuminata 66.41 0.00e+00 740.00
IUUC-Mpu-066162 Mustela putorius furo 100.00 0.00e+00 1071.00
IUUC-Mlu-067471 Myotis lucifugus 99.03 0.00e+00 1064.00
IUUC-Nle-070129 Nomascus leucogenys 100.00 0.00e+00 1071.00
IUUC-Opr-071176 Ochotona princeps 100.00 0.00e+00 1054.00
IUUC-Ont-071830 Oreochromis niloticus 95.13 0.00e+00 1033.00
IUUC-Oan-072778 Ornithorhynchus anatinus 99.61 0.00e+00 1070.00
IUUC-Ocu-074570 Oryctolagus cuniculus 100.00 0.00e+00 1071.00
IUUC-Oba-075507 Oryza barthii 65.23 0.00e+00 728.00
IUUC-Obr-076672 Oryza brachyantha 65.62 0.00e+00 732.00
IUUC-Ogl-077110 Oryza glaberrima 65.23 0.00e+00 728.00
IUUC-Ogu-077976 Oryza glumaepatula 65.23 0.00e+00 728.00
IUUC-Oin-079525 Oryza indica 65.23 0.00e+00 728.00
IUUC-Olo-080391 Oryza longistaminata 63.57 0.00e+00 719.00
IUUC-Oni-082778 Oryza nivara 65.23 0.00e+00 728.00
IUUC-Opu-083710 Oryza punctata 65.43 0.00e+00 729.00
IUUC-Oru-084250 Oryza rufipogon 65.23 0.00e+00 728.00
IUUC-Osa-085363 Oryza sativa 65.23 0.00e+00 728.00
IUUC-Ola-087092 Oryzias latipes 94.74 0.00e+00 1026.00
IUUC-Olu-087753 Ostreococcus lucimarinus 50.39 1.00e-140 493.00
IUUC-Oga-088278 Otolemur garnettii 91.31 0.00e+00 957.00
IUUC-Oar-089664 Ovis aries 99.42 0.00e+00 1066.00
IUUC-Ptr-090991 Pan troglodytes 100.00 0.00e+00 1071.00
IUUC-Pan-092697 Papio anubis 100.00 0.00e+00 1071.00
IUUC-Psi-093204 Pelodiscus sinensis 100.00 0.00e+00 1045.00
IUUC-Ppa-095325 Physcomitrella patens 66.02 0.00e+00 738.00
IUUC-Pfo-096988 Poecilia formosa 94.93 0.00e+00 1034.00
IUUC-Pab-098288 Pongo abelii 100.00 0.00e+00 1071.00
IUUC-Pop-098787 Populus trichocarpa 66.28 0.00e+00 739.00
IUUC-Pca-100583 Procavia capensis 93.06 0.00e+00 957.00
IUUC-Ppe-101307 Prunus persica 65.43 0.00e+00 731.00
IUUC-Pva-102711 Pteropus vampyrus 100.00 0.00e+00 1071.00
IUUC-Sha-107017 Sarcophilus harrisii 99.81 0.00e+00 1071.00
IUUC-Smo-109547 Selaginella moellendorffii 63.55 0.00e+00 677.00
IUUC-Sit-110278 Setaria italica 65.23 0.00e+00 708.00
IUUC-Sly-111777 Solanum lycopersicum 67.19 0.00e+00 740.00
IUUC-Stu-112293 Solanum tuberosum 66.99 0.00e+00 738.00
IUUC-Sar-112955 Sorex araneus 89.88 0.00e+00 947.00
IUUC-Sbi-114802 Sorghum bicolor 65.43 0.00e+00 703.00
IUUC-Ssc-116054 Sus scrofa 100.00 0.00e+00 1071.00
IUUC-Tgu-116909 Taeniopygia guttata 98.44 0.00e+00 1056.00
IUUC-Tru-118195 Takifugu rubripes 94.54 0.00e+00 1030.00
IUUC-Tsy-119420 Tarsius syrichta 92.20 0.00e+00 969.00
IUUC-Tni-120416 Tetraodon nigroviridis 94.15 0.00e+00 1024.00
IUUC-Tca-121653 Theobroma cacao 66.28 0.00e+00 712.00
IUUC-Tae-125609 Triticum aestivum 64.65 0.00e+00 725.00
IUUC-Tur-126197 Triticum urartu 66.12 3.00e-155 540.00
IUUC-Tbe-128009 Tupaia belangeri 100.00 0.00e+00 716.00
IUUC-Ttr-128719 Tursiops truncatus 91.42 0.00e+00 964.00
IUUC-Vpa-130579 Vicugna pacos 99.61 0.00e+00 1063.00
IUUC-Vvi-131127 Vitis vinifera 66.99 0.00e+00 739.00
IUUC-Xtr-132950 Xenopus tropicalis 91.88 0.00e+00 978.00
IUUC-Xma-133537 Xiphophorus maculatus 94.93 0.00e+00 1034.00
Created Date 25-Jun-2017

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