iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-131127

UUCD1 version

UUC-ViV-00052

Ensembl Protein ID

VIT_17s0000g08930.t01

UniProt Accession

D7SHM1; D7SHM1_VITVI

Genbank Protein ID

CBI14981.3

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

FN594950

Gene Name

SMU1; VIT_17s0000g08930

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_17s0000g08930	VIT_17s0000g08930.t01	VIT_17s0000g08930.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.90e-34	115.0	264	301
UBD/Beta-Prp	2.60e-55	188.3	218	389

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           H d v c++f  d  +l+sGs Dg+ikvW++rtg +l+
   Q: 264  HDDAVLCVDFsRDsEMLASGSQDGKIKVWRIRTGQCLR 301
           99*********777*********************986 PP

UBD/Beta-Prp

   S: 97   vlslsfspsgdklvsGshdrtirvwdletgqclee.......tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltg 177
           +   +fsp+g++lvs s d  i+vwd+ +g+  ++       t+  hd++v cv ++ d+ +l+sGs D+++++W+++tg++lr+l+ 
   Q: 218  AEYARFSPDGQFLVSCSVDGFIEVWDHISGKLKKDlqyqadeTFMMHDDAVLCVDFSRDSEMLASGSQDGKIKVWRIRTGQCLRRLER 305
           555789****************************9***************************************************99 PP
   S: 178  ghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlq 261
           +h + v+sl f+++g +++s+s d+t ++  l++g+ +++++gh++ v++  f++++ r+v++ssD ++++Wd+++ d+l+t++
   Q: 306  AHSQGVTSLVFSRDGSQILSASFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGGRVVTASSDCTVKVWDVKTTDCLQTFK 389
           9*********************************************************************************97 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MSSTLEIEAR DVIKIVLQFC KENSLHQTFQ TLQSECQVSL NTVDSLETFI ADINSGRWDA 60
ILPQVAQLKL PRKKLEDLYE QIVLEMIELR ELDTARAILR QTQAMGVMKQ EQPERYLRLE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATCGCTCTGC TACAACTGTT TGCGACAATG TCATCGACCT TAGAAATCGA AGCTCGAGAG 60
TAAGTTTTCT CTTTCATCTA CCTCTACTAC CGTCTCTATT CTCTTTAATC TTTGCTCATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus
GO:0008380--P:RNA splicing

KEGG

vvi:100241550

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000857	Aegilops tauschii	91.16	9.00e-79	284.00
IUUC-Aml-001330	Ailuropoda melanoleuca	66.99	0.00e+00	739.00
IUUC-Atr-002570	Amborella trichopoda	91.80	0.00e+00	994.00
IUUC-Apl-003826	Anas platyrhynchos	67.81	0.00e+00	714.00
IUUC-Aca-005183	Anolis carolinensis	66.73	0.00e+00	733.00
IUUC-Aly-005632	Arabidopsis lyrata	86.47	0.00e+00	953.00
IUUC-Ath-007219	Arabidopsis thaliana	86.47	0.00e+00	946.00
IUUC-Ame-011374	Astyanax mexicanus	66.21	0.00e+00	733.00
IUUC-Bta-012890	Bos taurus	66.99	0.00e+00	739.00
IUUC-Bdi-014061	Brachypodium distachyon	85.77	0.00e+00	952.00
IUUC-Bol-016332	Brassica oleracea	87.23	0.00e+00	959.00
IUUC-Bra-017612	Brassica rapa	87.06	0.00e+00	960.00
IUUC-Cel-018238	Caenorhabditis elegans	53.42	1.00e-169	588.00
IUUC-Cja-019336	Callithrix jacchus	66.99	0.00e+00	739.00
IUUC-Cfa-021108	Canis familiaris	66.99	0.00e+00	738.00
IUUC-Cpo-022052	Cavia porcellus	66.99	0.00e+00	739.00
IUUC-Cre-022595	Chlamydomonas reinhardtii	66.54	0.00e+00	740.00
IUUC-Csa-023488	Chlorocebus sabaeus	66.99	0.00e+00	739.00
IUUC-Cho-025010	Choloepus hoffmanni	58.59	0.00e+00	630.00
IUUC-Cin-025251	Ciona intestinalis	64.47	0.00e+00	712.00
IUUC-Csv-026092	Ciona savignyi	61.38	0.00e+00	655.00
IUUC-Dre-027382	Danio rerio	66.41	0.00e+00	731.00
IUUC-Dno-029007	Dasypus novemcinctus	67.19	0.00e+00	739.00
IUUC-Dor-030180	Dipodomys ordii	57.58	6.00e-129	453.00
IUUC-Dme-031762	Drosophila melanogaster	63.09	0.00e+00	700.00
IUUC-Ete-032933	Echinops telfairi	65.97	2.00e-174	603.00
IUUC-Eca-033864	Equus caballus	67.26	0.00e+00	730.00
IUUC-Eeu-034635	Erinaceus europaeus	60.57	2.00e-153	535.00
IUUC-Fca-036119	Felis catus	66.99	0.00e+00	739.00
IUUC-Fal-037396	Ficedula albicollis	67.94	0.00e+00	725.00
IUUC-Gmo-038962	Gadus morhua	65.43	0.00e+00	724.00
IUUC-Gga-040134	Gallus gallus	67.38	0.00e+00	741.00
IUUC-Gac-041630	Gasterosteus aculeatus	64.84	0.00e+00	721.00
IUUC-Gma-043928	Glycine max	93.55	0.00e+00	1018.00
IUUC-Ggo-045061	Gorilla gorilla	66.73	0.00e+00	734.00
IUUC-Hsa-046215	Homo sapiens	66.99	0.00e+00	739.00
IUUC-Hvu-047799	Hordeum vulgare	86.78	0.00e+00	670.00
IUUC-Itr-048826	Ictidomys tridecemlineatus	66.99	0.00e+00	739.00
IUUC-Lch-050209	Latimeria chalumnae	61.99	0.00e+00	671.00
IUUC-Lpe-050740	Leersia perrieri	87.33	0.00e+00	963.00
IUUC-Loc-052739	Lepisosteus oculatus	62.16	0.00e+00	675.00
IUUC-Laf-053895	Loxodonta africana	66.86	0.00e+00	734.00
IUUC-Mcc-055183	Macaca mulatta	66.99	0.00e+00	739.00
IUUC-Mtr-057730	Medicago truncatula	89.65	0.00e+00	964.00
IUUC-Mga-059222	Meleagris gallopavo	68.66	5.00e-178	615.00
IUUC-Mmr-061749	Microcebus murinus	67.26	0.00e+00	731.00
IUUC-Mdo-062920	Monodelphis domestica	66.80	0.00e+00	738.00
IUUC-Mmu-063228	Mus musculus	66.99	0.00e+00	739.00
IUUC-Mac-065084	Musa acuminata	91.99	0.00e+00	1000.00
IUUC-Mpu-066162	Mustela putorius furo	66.99	0.00e+00	739.00
IUUC-Mlu-067471	Myotis lucifugus	66.02	0.00e+00	731.00
IUUC-Nle-070129	Nomascus leucogenys	66.99	0.00e+00	739.00
IUUC-Opr-071176	Ochotona princeps	67.26	0.00e+00	730.00
IUUC-Ont-071830	Oreochromis niloticus	66.02	0.00e+00	734.00
IUUC-Oan-072778	Ornithorhynchus anatinus	67.19	0.00e+00	739.00
IUUC-Ocu-074570	Oryctolagus cuniculus	66.99	0.00e+00	739.00
IUUC-Oba-075507	Oryza barthii	87.72	0.00e+00	969.00
IUUC-Obr-076672	Oryza brachyantha	88.89	0.00e+00	979.00
IUUC-Ogl-077110	Oryza glaberrima	87.72	0.00e+00	969.00
IUUC-Ogu-077976	Oryza glumaepatula	87.72	0.00e+00	969.00
IUUC-Oin-079525	Oryza indica	87.72	0.00e+00	969.00
IUUC-Olo-080391	Oryza longistaminata	85.23	0.00e+00	960.00
IUUC-Oni-082778	Oryza nivara	87.72	0.00e+00	969.00
IUUC-Opu-083710	Oryza punctata	87.72	0.00e+00	967.00
IUUC-Oru-084250	Oryza rufipogon	87.72	0.00e+00	969.00
IUUC-Osa-085363	Oryza sativa	87.72	0.00e+00	969.00
IUUC-Ola-087092	Oryzias latipes	65.82	0.00e+00	729.00
IUUC-Olu-087753	Ostreococcus lucimarinus	54.56	3.00e-149	520.00
IUUC-Oga-088278	Otolemur garnettii	61.32	0.00e+00	655.00
IUUC-Oar-089664	Ovis aries	66.60	0.00e+00	734.00
IUUC-Ptr-090991	Pan troglodytes	66.99	0.00e+00	739.00
IUUC-Pan-092697	Papio anubis	66.99	0.00e+00	739.00
IUUC-Psi-093204	Pelodiscus sinensis	67.54	0.00e+00	723.00
IUUC-Ppa-095325	Physcomitrella patens	84.38	0.00e+00	929.00
IUUC-Pfo-096988	Poecilia formosa	65.82	0.00e+00	732.00
IUUC-Pab-098288	Pongo abelii	66.99	0.00e+00	739.00
IUUC-Pop-098787	Populus trichocarpa	92.55	0.00e+00	1008.00
IUUC-Pca-100583	Procavia capensis	62.90	0.00e+00	660.00
IUUC-Ppe-101307	Prunus persica	92.19	0.00e+00	1004.00
IUUC-Pva-102711	Pteropus vampyrus	66.99	0.00e+00	739.00
IUUC-Rno-105614	Rattus norvegicus	66.99	0.00e+00	739.00
IUUC-Sha-107017	Sarcophilus harrisii	66.99	0.00e+00	739.00
IUUC-Smo-108800	Selaginella moellendorffii	79.41	0.00e+00	848.00
IUUC-Sit-110278	Setaria italica	87.72	0.00e+00	943.00
IUUC-Sly-111777	Solanum lycopersicum	92.80	0.00e+00	1008.00
IUUC-Stu-112293	Solanum tuberosum	93.19	0.00e+00	1011.00
IUUC-Sar-112955	Sorex araneus	59.65	0.00e+00	637.00
IUUC-Sbi-114802	Sorghum bicolor	87.13	0.00e+00	936.00
IUUC-Ssc-116054	Sus scrofa	66.99	0.00e+00	739.00
IUUC-Tgu-116909	Taeniopygia guttata	67.32	0.00e+00	731.00
IUUC-Tru-118195	Takifugu rubripes	66.02	0.00e+00	732.00
IUUC-Tsy-119420	Tarsius syrichta	61.52	0.00e+00	662.00
IUUC-Tni-120416	Tetraodon nigroviridis	65.43	0.00e+00	726.00
IUUC-Tca-121653	Theobroma cacao	92.37	0.00e+00	980.00
IUUC-Tae-125609	Triticum aestivum	86.94	0.00e+00	960.00
IUUC-Tur-126197	Triticum urartu	85.25	0.00e+00	681.00
IUUC-Tbe-128009	Tupaia belangeri	67.46	1.00e-138	484.00
IUUC-Ttr-128719	Tursiops truncatus	60.55	0.00e+00	654.00
IUUC-Vpa-130579	Vicugna pacos	66.80	0.00e+00	731.00
IUUC-Xtr-132950	Xenopus tropicalis	62.79	0.00e+00	680.00
IUUC-Xma-133537	Xiphophorus maculatus	65.82	0.00e+00	732.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence