iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007526

Ensembl Protein ID

AT4G28450.1

UniProt Accession

Q93VK1; Q93VK1_ARATH

Genbank Protein ID

AAK50083.1; AAK73982.1; AAN28840.1; AEE85488.1

Protein Name

AT4g28450/F20O9_130; At4g28450/F20O9_130; WD repeat and SOF domain-containing protein 1

Genbank Nucleotide ID

AF372943; AY045624; AY143901; CP002687

Gene Name

At4g28450; F20O9.130; F20O9_130

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G28450	AT4G28450.1	AT4G28450.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
PINA	HINT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.30e-28	96.3	107	141

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           gH++ v++l   +d + lvs++ D+t+++W++ + 
   Q: 107  GHQGAVRGLTAsTDgNVLVSCGTDCTVRLWNVPRP 141
           8*******9888888****************9765 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MKIKTLSRSV DEYTRERSQD LQRVFHNFDP SLRPMEKAVE YQRALTAAKL EKIFARPFVG 60
AMDGHRDGVS CMAKNPNYLK GIFSASMDGD IRLWDISSRR TVCQFPGHQG AVRGLTASTD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACCTCTCCCA AAACCTCTCA TCTAGGGTTT TTCTGTCTGG AGAACTTAGC TCACTTTTGA 60
CTCTGTATCT CTCTGTGTCT CTCTTCCCCG TTAGTCTTCG TCGTGACCTT TTTGTAGTAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR007287--Sof1
IPR013979--TIF_beta_prop-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08662--eIF2A
PF04158--Sof1
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005730--C:nucleolus
GO:0032040--C:small-subunit processome
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

ath:AT4G28450

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002178	Ailuropoda melanoleuca	45.80	4.00e-126	444.00
IUUC-Atr-002799	Amborella trichopoda	73.89	0.00e+00	718.00
IUUC-Apl-003675	Anas platyrhynchos	45.70	2.00e-121	428.00
IUUC-Aca-004792	Anolis carolinensis	47.79	2.00e-133	468.00
IUUC-Aly-005998	Arabidopsis lyrata	98.01	0.00e+00	933.00
IUUC-Ago-007774	Ashbya gossypii	44.40	1.00e-115	409.00
IUUC-Acl-008024	Aspergillus clavatus	43.42	5.00e-103	367.00
IUUC-Afu-008930	Aspergillus fumigatus	40.55	1.00e-96	345.00
IUUC-Ani-009370	Aspergillus nidulans	42.83	5.00e-101	360.00
IUUC-Ang-009827	Aspergillus niger	45.06	9.00e-102	363.00
IUUC-Aor-010060	Aspergillus oryzae	43.94	8.00e-96	343.00
IUUC-Ate-010434	Aspergillus terreus	45.65	1.00e-88	319.00
IUUC-Ame-011967	Astyanax mexicanus	45.31	4.00e-120	424.00
IUUC-Bgr-011989	Blumeria graminis	43.45	8.00e-100	356.00
IUUC-Bta-013291	Bos taurus	33.98	2.00e-79	288.00
IUUC-Bci-013868	Botrytis cinerea	42.43	2.00e-97	348.00
IUUC-Bdi-014343	Brachypodium distachyon	72.35	0.00e+00	695.00
IUUC-Bol-015740	Brassica oleracea	87.83	0.00e+00	801.00
IUUC-Bra-016689	Brassica rapa	87.61	0.00e+00	792.00
IUUC-Cel-018536	Caenorhabditis elegans	38.11	1.00e-89	323.00
IUUC-Cja-018779	Callithrix jacchus	46.24	1.00e-129	455.00
IUUC-Cfa-020105	Canis familiaris	46.68	3.00e-131	460.00
IUUC-Cpo-021538	Cavia porcellus	46.02	3.00e-125	441.00
IUUC-Cre-022798	Chlamydomonas reinhardtii	66.26	4.00e-62	229.00
IUUC-Csa-023492	Chlorocebus sabaeus	46.46	5.00e-130	456.00
IUUC-Cho-024497	Choloepus hoffmanni	39.69	5.00e-72	264.00
IUUC-Cin-025524	Ciona intestinalis	49.89	3.00e-134	471.00
IUUC-Csv-026197	Ciona savignyi	48.78	1.00e-131	462.00
IUUC-Cgl-026745	Colletotrichum gloeosporioides	43.15	4.00e-94	337.00
IUUC-Cne-026840	Cryptococcus neoformans	34.56	2.00e-74	274.00
IUUC-Cme-027111	Cyanidioschyzon merolae	34.89	7.00e-73	267.00
IUUC-Dre-027471	Danio rerio	46.91	1.00e-125	442.00
IUUC-Dno-029790	Dasypus novemcinctus	47.21	2.00e-103	368.00
IUUC-Dor-030971	Dipodomys ordii	36.73	4.00e-91	328.00
IUUC-Dse-031563	Dothistroma septosporum	44.05	2.00e-102	365.00
IUUC-Dme-032161	Drosophila melanogaster	42.57	7.00e-114	403.00
IUUC-Ete-033127	Echinops telfairi	44.05	2.00e-119	422.00
IUUC-Eca-033531	Equus caballus	45.79	1.00e-121	429.00
IUUC-Eeu-034663	Erinaceus europaeus	42.07	7.00e-108	383.00
IUUC-Fca-036258	Felis catus	46.46	3.00e-130	457.00
IUUC-Fal-037456	Ficedula albicollis	46.68	4.00e-124	437.00
IUUC-Fox-038025	Fusarium oxysporum	42.63	3.00e-94	338.00
IUUC-Fso-038344	Fusarium solani	41.85	2.00e-92	332.00
IUUC-Gmo-039643	Gadus morhua	45.58	2.00e-124	438.00
IUUC-Ggr-039816	Gaeumannomyces graminis	41.63	1.00e-91	329.00
IUUC-Gga-040143	Gallus gallus	47.35	5.00e-128	450.00
IUUC-Gac-041665	Gasterosteus aculeatus	46.68	1.00e-129	455.00
IUUC-Gma-043073	Glycine max	76.99	0.00e+00	754.00
IUUC-Ggo-045058	Gorilla gorilla	46.46	9.00e-130	456.00
IUUC-Hsa-046843	Homo sapiens	46.46	5.00e-129	454.00
IUUC-Hvu-047654	Hordeum vulgare	67.10	2.00e-115	407.00
IUUC-Itr-048822	Ictidomys tridecemlineatus	46.02	4.00e-129	454.00
IUUC-Kpa-049232	Komagataella pastoris	43.48	9.00e-120	422.00
IUUC-Lch-050542	Latimeria chalumnae	45.26	1.00e-132	465.00
IUUC-Lpe-051622	Leersia perrieri	74.12	0.00e+00	712.00
IUUC-Loc-052674	Lepisosteus oculatus	46.59	5.00e-133	466.00
IUUC-Lma-053108	Leptosphaeria maculans	42.83	6.00e-99	353.00
IUUC-Laf-053385	Loxodonta africana	46.02	5.00e-126	443.00
IUUC-Mcc-055151	Macaca mulatta	46.46	1.00e-129	456.00
IUUC-Meu-056230	Macropus eugenii	40.93	3.00e-53	202.00
IUUC-Mor-057013	Magnaporthe oryzae	41.38	3.00e-89	321.00
IUUC-Mpo-057530	Magnaporthe poae	42.33	3.00e-92	331.00
IUUC-Mtr-058187	Medicago truncatula	77.88	0.00e+00	746.00
IUUC-Mla-058964	Melampsora laricipopulina	36.82	2.00e-87	315.00
IUUC-Mga-059712	Meleagris gallopavo	46.53	9.00e-120	422.00
IUUC-Mvi-060370	Microbotryum violaceum	39.71	1.00e-69	256.00
IUUC-Mmr-061340	Microcebus murinus	44.25	1.00e-121	429.00
IUUC-Mdo-062978	Monodelphis domestica	46.46	3.00e-130	457.00
IUUC-Mmu-063439	Mus musculus	46.46	3.00e-130	457.00
IUUC-Mac-065129	Musa acuminata	75.44	0.00e+00	748.00
IUUC-Mpu-066548	Mustela putorius furo	42.14	6.00e-95	340.00
IUUC-Mlu-067660	Myotis lucifugus	45.80	7.00e-129	452.00
IUUC-Nfi-068455	Neosartorya fischeri	41.81	9.00e-100	356.00
IUUC-Ncr-068848	Neurospora crassa	39.39	8.00e-93	333.00
IUUC-Nle-069923	Nomascus leucogenys	46.46	3.00e-129	454.00
IUUC-Opr-070279	Ochotona princeps	38.78	5.00e-37	147.00
IUUC-Ont-072234	Oreochromis niloticus	45.98	1.00e-130	459.00
IUUC-Oan-073713	Ornithorhynchus anatinus	40.50	5.00e-46	176.00
IUUC-Ocu-073782	Oryctolagus cuniculus	46.68	2.00e-130	458.00
IUUC-Oba-075161	Oryza barthii	74.34	0.00e+00	716.00
IUUC-Obr-076868	Oryza brachyantha	73.89	0.00e+00	712.00
IUUC-Ogl-077062	Oryza glaberrima	74.34	0.00e+00	716.00
IUUC-Ogu-078308	Oryza glumaepatula	74.34	0.00e+00	716.00
IUUC-Oin-079378	Oryza indica	74.34	0.00e+00	716.00
IUUC-Olo-080638	Oryza longistaminata	71.46	0.00e+00	676.00
IUUC-Oni-082368	Oryza nivara	74.34	0.00e+00	716.00
IUUC-Opu-083628	Oryza punctata	74.34	0.00e+00	716.00
IUUC-Oru-085226	Oryza rufipogon	74.12	0.00e+00	714.00
IUUC-Osa-085368	Oryza sativa	71.86	1.00e-119	421.00
IUUC-Ola-086836	Oryzias latipes	46.02	2.00e-131	461.00
IUUC-Olu-087755	Ostreococcus lucimarinus	52.86	1.00e-144	505.00
IUUC-Oga-088170	Otolemur garnettii	46.24	9.00e-130	456.00
IUUC-Oar-089388	Ovis aries	46.90	2.00e-130	458.00
IUUC-Ptr-090494	Pan troglodytes	46.46	3.00e-129	454.00
IUUC-Pan-091697	Papio anubis	46.46	1.00e-129	456.00
IUUC-Psi-093916	Pelodiscus sinensis	44.47	7.00e-120	423.00
IUUC-Pno-095004	Phaeosphaeria nodorum	41.72	3.00e-93	334.00
IUUC-Ppa-095514	Physcomitrella patens	64.38	0.00e+00	649.00
IUUC-Pfo-097432	Poecilia formosa	48.05	4.00e-130	457.00
IUUC-Pab-098423	Pongo abelii	46.68	2.00e-130	458.00
IUUC-Pop-099649	Populus trichocarpa	82.30	0.00e+00	798.00
IUUC-Pca-100365	Procavia capensis	44.25	2.00e-118	419.00
IUUC-Ppe-101350	Prunus persica	77.51	0.00e+00	747.00
IUUC-Pva-102845	Pteropus vampyrus	47.12	5.00e-128	451.00
IUUC-Pgr-103469	Puccinia graminis	37.91	2.00e-64	239.00
IUUC-Ptt-103980	Puccinia triticina	37.72	4.00e-63	234.00
IUUC-Pte-104111	Pyrenophora teres	42.60	2.00e-95	342.00
IUUC-Pyt-104610	Pyrenophora triticirepentis	42.83	7.00e-96	343.00
IUUC-Rno-105082	Rattus norvegicus	46.24	3.00e-130	457.00
IUUC-Sce-106340	Saccharomyces cerevisiae	45.39	4.00e-113	400.00
IUUC-Sha-106584	Sarcophilus harrisii	46.02	2.00e-129	455.00
IUUC-Sja-107703	Schizosaccharomyces japonicus	43.88	6.00e-100	357.00
IUUC-Spo-108046	Schizosaccharomyces pombe	44.77	7.00e-106	376.00
IUUC-Ssl-108574	Sclerotinia sclerotiorum	42.66	4.00e-97	347.00
IUUC-Smo-109548	Selaginella moellendorffii	61.28	3.00e-178	617.00
IUUC-Sit-110242	Setaria italica	72.57	0.00e+00	696.00
IUUC-Sly-111762	Solanum lycopersicum	78.32	0.00e+00	746.00
IUUC-Stu-112156	Solanum tuberosum	78.10	0.00e+00	742.00
IUUC-Sbi-114104	Sorghum bicolor	71.68	0.00e+00	694.00
IUUC-Sre-114951	Sporisorium reilianum	39.92	8.00e-103	366.00
IUUC-Ssc-115510	Sus scrofa	46.68	6.00e-130	456.00
IUUC-Tgu-117234	Taeniopygia guttata	46.48	4.00e-116	410.00
IUUC-Tru-117986	Takifugu rubripes	44.74	2.00e-125	441.00
IUUC-Tsy-119252	Tarsius syrichta	46.21	2.00e-118	418.00
IUUC-Tni-119785	Tetraodon nigroviridis	46.70	1.00e-123	436.00
IUUC-Tca-121222	Theobroma cacao	80.97	0.00e+00	764.00
IUUC-Tre-122243	Trichoderma reesei	41.19	2.00e-94	338.00
IUUC-Tvi-122293	Trichoderma virens	41.36	5.00e-93	334.00
IUUC-Tae-125191	Triticum aestivum	70.58	0.00e+00	672.00
IUUC-Tur-126098	Triticum urartu	66.60	9.00e-176	608.00
IUUC-Tme-127200	Tuber melanosporum	46.36	4.00e-118	417.00
IUUC-Tbe-127568	Tupaia belangeri	42.92	2.00e-55	209.00
IUUC-Ttr-129185	Tursiops truncatus	41.81	2.00e-107	382.00
IUUC-Uma-129353	Ustilago maydis	41.15	4.00e-104	371.00
IUUC-Vda-129768	Verticillium dahliae	41.19	4.00e-88	317.00
IUUC-Vpa-130572	Vicugna pacos	46.46	2.00e-128	452.00
IUUC-Vvi-131555	Vitis vinifera	80.31	0.00e+00	769.00
IUUC-Xtr-132263	Xenopus tropicalis	46.90	4.00e-108	384.00
IUUC-Xma-133925	Xiphophorus maculatus	47.82	8.00e-130	456.00
IUUC-Yli-134384	Yarrowia lipolytica	44.14	2.00e-106	378.00
IUUC-Zma-135616	Zea mays	71.90	0.00e+00	692.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence