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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105497
Ensembl Protein ID ENSRNOP00000023724.3
UniProt Accession P60517; Q9QUI7; GBRAP_RAT
Genbank Protein ID AAD47643.1; AAH58441.1
Protein Name Gamma-aminobutyric acid receptor-associated protein; GABA(A) receptor-associated protein
Genbank Nucleotide ID AF161588; BC058441
Gene Name Gabarap
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000017417.6 ENSRNOT00000023724.6 ENSRNOP00000023724.3
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNATRANSFACmiRNAMapRAID2
Protein-protein Interaction
IIDiRefIndexPINAHINT
Mentha
Protein 3D Structure
PDBMMDB
Post-translational Modifications (PTMs)
CPLMPhosphositePlus
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
ULD/UBL/ATG8 2.30e-53 179.1 13 116
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   ULD/UBL/ATG8
   S: 1    krkeevekirdkfpdkiPvivekakkekipeldkkkylvPsdltvgqlvkiirkrlqlraedalfllvnnslvsvsatlaeiyeeekde 89
           kr++e+ekir+k+pd++Pviveka+k++i++ldkkkylvPsdltvgq++++irkr++lraedalf++vnn+++++sat++++y+e+++e
   Q: 13   KRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEE 101
           699************************************************************************************** PP
   S: 90   dgflyvayaseetfG 104
           d+fly+ay++e+++G
   Q: 102  DFFLYIAYSDESVYG 116
           **************9 PP
   
Organism Rattus norvegicus
Functional Description
(View)

Functional Description


     Involved in apoptosis (By similarity). May play a role in intracellular transport of GABA(A) receptors and its interaction with the cytoskeleton. Involved in autophagy (By similarity).
 Involved in apoptosis (By similarity). May play a role in intracellular transport of GABA(A) receptors and its interaction with the cytoskeleton. Involved in autophagy (By similarity).
Protein Sequence
(Fasta)
MKFVYKEEHP FEKRRSEGEK IRKKYPDRVP VIVEKAPKAR IGDLDKKKYL VPSDLTVGQF 60
YFLIRKRIHL RAEDALFFFV NNVIPPTSAT MGQLYQEHHE EDFFLYIAYS DESVYGL 117
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105497|ULD,ATG8|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CCCCCTGGGT TCCCTCAGCC CAGCTCGGTC CAGCCCGGTT CTCGGGAGAA TGAAGTTCGT 60
GTACAAAGAG GAGCATCCGT TCGAGAAGCG CCGCTCTGAG GGCGAGAAAA TCCGAAAGAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105497|ULD,ATG8|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0053--Apoptosis
KW-0072--Autophagy
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0206--Cytoskeleton
KW-0333--Golgi apparatus
KW-0449--Lipoprotein
KW-0472--Membrane
KW-0493--Microtubule
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
Interpro

IPR004241--Atg8-like
IPR029071--Ubiquitin-rel_dom
Pfam

PF02991--Atg8
Gene Ontology

GO:0015629--C:actin cytoskeleton
GO:0005776--C:autophagosome
GO:0000421--C:autophagosome membrane
GO:0005930--C:axoneme
GO:0044297--C:cell body
GO:0031410--C:cytoplasmic vesicle
GO:0000139--C:Golgi membrane
GO:0005764--C:lysosome
GO:0005874--C:microtubule
GO:0005875--C:microtubule associated complex
GO:0048471--C:perinuclear region of cytoplasm
GO:0005886--C:plasma membrane
GO:0005790--C:smooth endoplasmic reticulum
GO:0097225--C:sperm midpiece
GO:0050811--F:GABA receptor binding
GO:0006914--P:autophagy
GO:0008625--P:extrinsic apoptotic signaling pathway via death domain receptors
GO:0000226--P:microtubule cytoskeleton organization
GO:0015031--P:protein transport
KEGG rno:58974
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001323 Ailuropoda melanoleuca 100.00 4.00e-65 239.00
IUUC-Ago-007898 Ashbya gossypii 54.46 3.00e-34 136.00
IUUC-Acl-008314 Aspergillus clavatus 59.48 7.00e-39 152.00
IUUC-Afl-008708 Aspergillus flavus 59.48 8.00e-39 151.00
IUUC-Afu-009097 Aspergillus fumigatus 59.48 7.00e-39 152.00
IUUC-Ang-009530 Aspergillus niger 59.48 7.00e-39 152.00
IUUC-Aor-009909 Aspergillus oryzae 59.48 8.00e-39 151.00
IUUC-Ate-010358 Aspergillus terreus 59.48 7.00e-39 152.00
IUUC-Ame-010914 Astyanax mexicanus 98.28 6.00e-63 231.00
IUUC-Bgr-012248 Blumeria graminis 59.48 1.00e-38 151.00
IUUC-Bta-012805 Bos taurus 100.00 4.00e-65 239.00
IUUC-Bci-013959 Botrytis cinerea 60.34 3.00e-39 153.00
IUUC-Bra-016921 Brassica rapa 58.41 4.00e-39 152.00
IUUC-Cel-018200 Caenorhabditis elegans 83.62 1.00e-54 204.00
IUUC-Cja-019369 Callithrix jacchus 100.00 4.00e-65 239.00
IUUC-Cfa-020603 Canis familiaris 100.00 4.00e-65 239.00
IUUC-Csa-024117 Chlorocebus sabaeus 100.00 4.00e-65 239.00
IUUC-Cin-025297 Ciona intestinalis 92.24 2.00e-59 220.00
IUUC-Cgl-026691 Colletotrichum gloeosporioides 43.12 4.00e-32 130.00
IUUC-Cne-026889 Cryptococcus neoformans 58.04 2.00e-37 147.00
IUUC-Dre-028351 Danio rerio 99.14 1.00e-64 238.00
IUUC-Dno-029218 Dasypus novemcinctus 99.11 9.00e-62 230.00
IUUC-Dor-030245 Dipodomys ordii 100.00 4.00e-65 239.00
IUUC-Dse-031428 Dothistroma septosporum 59.48 6.00e-39 152.00
IUUC-Dme-031813 Drosophila melanogaster 91.45 2.00e-60 223.00
IUUC-Ete-032671 Echinops telfairi 98.29 2.00e-64 236.00
IUUC-Eeu-035131 Erinaceus europaeus 96.55 2.00e-45 172.00
IUUC-Fca-036493 Felis catus 100.00 5.00e-65 239.00
IUUC-Fox-037846 Fusarium oxysporum 59.48 8.00e-39 151.00
IUUC-Fso-038134 Fusarium solani 59.48 8.00e-39 151.00
IUUC-Gmo-039671 Gadus morhua 98.28 7.00e-63 232.00
IUUC-Gga-040257 Gallus gallus 96.55 1.00e-62 231.00
IUUC-Gac-042507 Gasterosteus aculeatus 98.28 2.00e-63 233.00
IUUC-Ggo-044860 Gorilla gorilla 100.00 6.00e-65 238.00
IUUC-Hsa-045905 Homo sapiens 100.00 4.00e-65 239.00
IUUC-Itr-048405 Ictidomys tridecemlineatus 100.00 4.00e-65 239.00
IUUC-Lch-049798 Latimeria chalumnae 77.59 9.00e-52 194.00
IUUC-Loc-052290 Lepisosteus oculatus 98.28 5.00e-63 232.00
IUUC-Laf-054203 Loxodonta africana 100.00 4.00e-65 239.00
IUUC-Mcc-055307 Macaca mulatta 100.00 4.00e-65 239.00
IUUC-Mla-059098 Melampsora laricipopulina 60.34 2.00e-39 154.00
IUUC-Mvi-060496 Microbotryum violaceum 59.82 6.00e-38 149.00
IUUC-Mmr-061776 Microcebus murinus 100.00 4.00e-65 239.00
IUUC-Mmu-064157 Mus musculus 100.00 4.00e-65 239.00
IUUC-Mpu-066028 Mustela putorius furo 100.00 4.00e-65 239.00
IUUC-Mlu-067166 Myotis lucifugus 100.00 4.00e-65 239.00
IUUC-Nfi-068367 Neosartorya fischeri 59.48 7.00e-39 152.00
IUUC-Ncr-068894 Neurospora crassa 59.48 7.00e-39 151.00
IUUC-Nle-069220 Nomascus leucogenys 100.00 4.00e-65 239.00
IUUC-Opr-070777 Ochotona princeps 100.00 5.00e-65 238.00
IUUC-Ocu-074148 Oryctolagus cuniculus 100.00 4.00e-65 239.00
IUUC-Ola-086391 Oryzias latipes 86.84 9.00e-52 194.00
IUUC-Olu-087892 Ostreococcus lucimarinus 63.48 3.00e-40 156.00
IUUC-Oga-088312 Otolemur garnettii 100.00 4.00e-65 239.00
IUUC-Oar-089989 Ovis aries 100.00 4.00e-65 239.00
IUUC-Ptr-091108 Pan troglodytes 100.00 4.00e-65 239.00
IUUC-Pno-095035 Phaeosphaeria nodorum 59.48 9.00e-39 151.00
IUUC-Ppa-095787 Physcomitrella patens 62.07 5.00e-40 155.00
IUUC-Pab-097660 Pongo abelii 100.00 4.00e-65 239.00
IUUC-Pca-100230 Procavia capensis 100.00 4.00e-65 239.00
IUUC-Pte-104230 Pyrenophora teres 59.48 9.00e-39 151.00
IUUC-Sha-106656 Sarcophilus harrisii 100.00 4.00e-65 239.00
IUUC-Ssl-108578 Sclerotinia sclerotiorum 60.34 2.00e-39 153.00
IUUC-Sit-110531 Setaria italica 61.06 3.00e-39 153.00
IUUC-Sar-113670 Sorex araneus 92.31 8.00e-60 221.00
IUUC-Ssc-116182 Sus scrofa 100.00 4.00e-65 239.00
IUUC-Tru-118632 Takifugu rubripes 98.28 2.00e-63 234.00
IUUC-Tre-122077 Trichoderma reesei 59.48 6.00e-39 152.00
IUUC-Tvi-122400 Trichoderma virens 59.48 6.00e-39 152.00
IUUC-Vda-129807 Verticillium dahliae 59.48 6.00e-39 152.00
IUUC-Xma-133400 Xiphophorus maculatus 98.28 3.00e-63 233.00
Created Date 25-Jun-2017

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