iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sre-115099

Ensembl Protein ID

CBQ70055

UniProt Accession

E6ZS48; E6ZS48_SPORE

Genbank Protein ID

CBQ70055.1

Protein Name

Probable SSL1-TFIIH subunit (Transcription initiation factor), factor B

Genbank Nucleotide ID

FQ311440

Gene Name

sr10029

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
sr10029	CBQ70055	CBQ70055

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	43.33	4.00e-102	367.00	IUUC-Sce-106434

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sporisorium reilianum

Protein Sequence
(Fasta)

MPPRIADDEY VDDGADAYDA EDFLDDDDSG DEYRSAPSLP KLGTLRGAAS RSSAIGGASN 60
GRAGTSAAGA SSSNAAAAAR AKAAANAKSK QKDQGYSWEA TYKRSWDAVA EDDSGSLESA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCGCCCC GCATAGCCGA CGACGAATAC GTCGACGATG GCGCCGATGC CTACGATGCC 60
GAAGATTTCC TCGATGACGA TGACAGTGGC GACGAATACC GCTCAGCACC ATCTTTACCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR007198--Ssl1-like
IPR004595--TFIIH_C1-like_dom
IPR012170--TFIIH_SSL1/p44
IPR002035--VWF_A
IPR013087--Znf_C2H2_type

PROSITE

PS50234--VWFA
PS00028--ZINC_FINGER_C2H2_1
PS50157--ZINC_FINGER_C2H2_2

Pfam

PF07975--C1_4
PF04056--Ssl1

SMART

SM01047--C1_4
SM00327--VWA

Gene Ontology

GO:0000439--C:core TFIIH complex
GO:0003743--F:translation initiation factor activity
GO:0008270--F:zinc ion binding
GO:0006289--P:nucleotide-excision repair
GO:0006351--P:transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000536	Aegilops tauschii	34.29	1.00e-46	178.00
IUUC-Aml-002041	Ailuropoda melanoleuca	37.03	3.00e-73	266.00
IUUC-Atr-003056	Amborella trichopoda	35.61	4.00e-64	236.00
IUUC-Apl-003464	Anas platyrhynchos	35.92	5.00e-64	236.00
IUUC-Aca-004745	Anolis carolinensis	38.11	9.00e-74	268.00
IUUC-Aly-005559	Arabidopsis lyrata	35.48	1.00e-72	265.00
IUUC-Ath-007556	Arabidopsis thaliana	35.48	2.00e-72	264.00
IUUC-Ago-007851	Ashbya gossypii	42.38	3.00e-102	363.00
IUUC-Acl-008100	Aspergillus clavatus	44.24	2.00e-105	374.00
IUUC-Afl-008649	Aspergillus flavus	48.28	1.00e-17	79.30
IUUC-Afu-009066	Aspergillus fumigatus	44.00	1.00e-110	391.00
IUUC-Ani-009372	Aspergillus nidulans	45.41	3.00e-107	380.00
IUUC-Ang-009726	Aspergillus niger	45.00	1.00e-112	397.00
IUUC-Aor-010135	Aspergillus oryzae	45.24	4.00e-107	379.00
IUUC-Ate-010399	Aspergillus terreus	46.95	2.00e-38	150.00
IUUC-Ame-011618	Astyanax mexicanus	37.64	1.00e-80	291.00
IUUC-Bgr-012154	Blumeria graminis	45.77	7.00e-109	385.00
IUUC-Bta-012353	Bos taurus	38.65	7.00e-77	279.00
IUUC-Bci-013932	Botrytis cinerea	46.41	1.00e-108	385.00
IUUC-Bdi-014391	Brachypodium distachyon	34.75	8.00e-72	262.00
IUUC-Bol-015128	Brassica oleracea	36.02	6.00e-73	266.00
IUUC-Bra-017932	Brassica rapa	36.73	1.00e-72	265.00
IUUC-Cel-018649	Caenorhabditis elegans	32.40	1.00e-57	215.00
IUUC-Cja-018776	Callithrix jacchus	37.68	9.00e-72	262.00
IUUC-Cfa-020584	Canis familiaris	37.03	4.00e-73	266.00
IUUC-Cpo-021300	Cavia porcellus	37.86	5.00e-74	269.00
IUUC-Cre-022657	Chlamydomonas reinhardtii	34.68	1.00e-61	228.00
IUUC-Csa-024092	Chlorocebus sabaeus	37.92	6.00e-73	266.00
IUUC-Cho-024919	Choloepus hoffmanni	35.78	8.00e-31	125.00
IUUC-Cin-025386	Ciona intestinalis	36.68	8.00e-81	292.00
IUUC-Csv-026295	Ciona savignyi	34.19	2.00e-74	271.00
IUUC-Cgl-026612	Colletotrichum gloeosporioides	44.27	2.00e-101	360.00
IUUC-Cne-026956	Cryptococcus neoformans	46.46	8.00e-108	382.00
IUUC-Cme-027150	Cyanidioschyzon merolae	28.30	4.00e-45	174.00
IUUC-Dre-027962	Danio rerio	39.37	2.00e-82	297.00
IUUC-Dno-029979	Dasypus novemcinctus	40.20	5.00e-59	219.00
IUUC-Dse-031405	Dothistroma septosporum	42.52	8.00e-89	318.00
IUUC-Dme-031710	Drosophila melanogaster	35.32	9.00e-76	275.00
IUUC-Ete-032631	Echinops telfairi	36.52	4.00e-71	259.00
IUUC-Eca-034054	Equus caballus	37.38	4.00e-73	266.00
IUUC-Fca-035724	Felis catus	36.71	1.00e-67	248.00
IUUC-Fal-036987	Ficedula albicollis	36.71	2.00e-80	290.00
IUUC-Fox-037692	Fusarium oxysporum	43.55	2.00e-105	374.00
IUUC-Fso-038442	Fusarium solani	44.34	9.00e-100	355.00
IUUC-Gmo-039273	Gadus morhua	37.44	6.00e-80	289.00
IUUC-Ggr-040009	Gaeumannomyces graminis	40.72	2.00e-91	327.00
IUUC-Gga-041089	Gallus gallus	36.71	2.00e-80	291.00
IUUC-Gac-041978	Gasterosteus aculeatus	36.43	9.00e-74	268.00
IUUC-Gma-043371	Glycine max	37.26	2.00e-77	281.00
IUUC-Hsa-046001	Homo sapiens	38.41	1.00e-72	265.00
IUUC-Itr-048355	Ictidomys tridecemlineatus	37.26	4.00e-80	289.00
IUUC-Kpa-049235	Komagataella pastoris	46.12	4.00e-102	363.00
IUUC-Lch-049926	Latimeria chalumnae	38.07	4.00e-77	280.00
IUUC-Lpe-051352	Leersia perrieri	35.61	2.00e-71	261.00
IUUC-Loc-051987	Lepisosteus oculatus	37.35	1.00e-80	291.00
IUUC-Lma-053171	Leptosphaeria maculans	38.57	4.00e-87	313.00
IUUC-Laf-054372	Loxodonta africana	38.65	9.00e-77	278.00
IUUC-Mcc-055108	Macaca mulatta	37.92	8.00e-73	265.00
IUUC-Mor-056990	Magnaporthe oryzae	42.04	3.00e-98	350.00
IUUC-Mtr-058401	Medicago truncatula	37.44	8.00e-80	288.00
IUUC-Mla-059186	Melampsora laricipopulina	50.00	2.00e-121	427.00
IUUC-Mvi-060262	Microbotryum violaceum	47.34	2.00e-115	407.00
IUUC-Mmr-061688	Microcebus murinus	36.08	1.00e-66	244.00
IUUC-Mdo-062154	Monodelphis domestica	36.56	3.00e-77	280.00
IUUC-Mmu-064232	Mus musculus	36.71	4.00e-72	263.00
IUUC-Mac-065091	Musa acuminata	34.41	3.00e-71	260.00
IUUC-Mpu-066747	Mustela putorius furo	34.43	5.00e-61	226.00
IUUC-Mlu-067799	Myotis lucifugus	35.31	3.00e-62	230.00
IUUC-Nfi-068371	Neosartorya fischeri	33.55	3.00e-23	99.00
IUUC-Ncr-068704	Neurospora crassa	42.44	2.00e-95	340.00
IUUC-Nle-069054	Nomascus leucogenys	37.68	8.00e-72	262.00
IUUC-Ont-071624	Oreochromis niloticus	36.21	1.00e-77	281.00
IUUC-Oan-072898	Ornithorhynchus anatinus	37.03	3.00e-78	283.00
IUUC-Ocu-074289	Oryctolagus cuniculus	38.15	1.00e-61	228.00
IUUC-Oba-075985	Oryza barthii	36.08	1.00e-71	261.00
IUUC-Obr-076887	Oryza brachyantha	36.08	1.00e-72	265.00
IUUC-Ogl-077823	Oryza glaberrima	36.08	1.00e-71	261.00
IUUC-Ogu-078412	Oryza glumaepatula	37.54	1.00e-62	232.00
IUUC-Oin-079569	Oryza indica	34.28	2.00e-48	184.00
IUUC-Olo-080249	Oryza longistaminata	34.81	2.00e-47	181.00
IUUC-Ome-081240	Oryza meridionalis	37.54	2.00e-62	231.00
IUUC-Oni-082152	Oryza nivara	37.54	3.00e-62	231.00
IUUC-Opu-084011	Oryza punctata	36.08	8.00e-72	262.00
IUUC-Oru-084719	Oryza rufipogon	37.54	1.00e-62	231.00
IUUC-Osa-085286	Oryza sativa	36.32	1.00e-72	265.00
IUUC-Ola-086525	Oryzias latipes	33.95	1.00e-61	228.00
IUUC-Olu-087876	Ostreococcus lucimarinus	34.68	5.00e-57	213.00
IUUC-Oga-088125	Otolemur garnettii	38.65	8.00e-76	275.00
IUUC-Oar-089701	Ovis aries	38.89	5.00e-77	279.00
IUUC-Ptr-091218	Pan troglodytes	37.92	9.00e-73	265.00
IUUC-Pan-091755	Papio anubis	37.92	8.00e-73	265.00
IUUC-Psi-094061	Pelodiscus sinensis	35.85	5.00e-77	279.00
IUUC-Pma-094430	Petromyzon marinus	44.16	4.00e-57	213.00
IUUC-Pno-094900	Phaeosphaeria nodorum	32.94	1.00e-56	212.00
IUUC-Ppa-095895	Physcomitrella patens	36.94	2.00e-78	284.00
IUUC-Pfo-096297	Poecilia formosa	45.45	2.00e-57	214.00
IUUC-Pab-097717	Pongo abelii	37.92	8.00e-73	265.00
IUUC-Pop-098938	Populus trichocarpa	35.18	1.00e-74	271.00
IUUC-Pca-100389	Procavia capensis	35.06	4.00e-58	216.00
IUUC-Ppe-102045	Prunus persica	34.61	4.00e-74	270.00
IUUC-Pva-102357	Pteropus vampyrus	31.51	8.00e-20	88.60
IUUC-Pgr-103399	Puccinia graminis	49.18	4.00e-118	416.00
IUUC-Ptt-103872	Puccinia triticina	48.59	5.00e-118	416.00
IUUC-Pte-104092	Pyrenophora teres	37.10	2.00e-78	284.00
IUUC-Pyt-104669	Pyrenophora triticirepentis	38.93	1.00e-77	282.00
IUUC-Rno-105515	Rattus norvegicus	38.00	8.00e-77	278.00
IUUC-Sce-106434	Saccharomyces cerevisiae	43.33	1.00e-103	368.00
IUUC-Sha-106808	Sarcophilus harrisii	36.56	2.00e-77	281.00
IUUC-Sja-107995	Schizosaccharomyces japonicus	44.58	1.00e-100	358.00
IUUC-Spo-108044	Schizosaccharomyces pombe	44.08	5.00e-105	372.00
IUUC-Smo-109581	Selaginella moellendorffii	38.00	4.00e-78	283.00
IUUC-Sit-110704	Setaria italica	35.38	2.00e-71	261.00
IUUC-Sly-110990	Solanum lycopersicum	34.01	5.00e-56	209.00
IUUC-Stu-112542	Solanum tuberosum	36.36	7.00e-36	142.00
IUUC-Sar-113766	Sorex araneus	38.58	2.00e-65	240.00
IUUC-Sbi-114016	Sorghum bicolor	35.29	3.00e-70	257.00
IUUC-Ssc-115277	Sus scrofa	39.14	6.00e-71	259.00
IUUC-Tgu-117343	Taeniopygia guttata	36.23	2.00e-78	284.00
IUUC-Tru-118397	Takifugu rubripes	35.51	8.00e-76	275.00
IUUC-Tni-120272	Tetraodon nigroviridis	36.73	1.00e-75	275.00
IUUC-Tca-121514	Theobroma cacao	37.59	7.00e-79	285.00
IUUC-Tre-121990	Trichoderma reesei	44.44	2.00e-97	348.00
IUUC-Tvi-122504	Trichoderma virens	45.69	3.00e-95	340.00
IUUC-Tae-123153	Triticum aestivum	35.46	1.00e-72	265.00
IUUC-Tur-126693	Triticum urartu	39.45	2.00e-56	211.00
IUUC-Tme-127011	Tuber melanosporum	46.17	6.00e-108	382.00
IUUC-Tbe-127939	Tupaia belangeri	36.56	7.00e-72	262.00
IUUC-Ttr-128889	Tursiops truncatus	33.96	8.00e-66	242.00
IUUC-Uma-129450	Ustilago maydis	84.30	0.00e+00	826.00
IUUC-Vda-129919	Verticillium dahliae	42.86	2.00e-89	321.00
IUUC-Vvi-130928	Vitis vinifera	34.27	5.00e-75	273.00
IUUC-Xtr-131891	Xenopus tropicalis	36.32	5.00e-73	266.00
IUUC-Xma-133260	Xiphophorus maculatus	43.51	2.00e-56	210.00
IUUC-Yli-134578	Yarrowia lipolytica	41.88	1.00e-94	338.00
IUUC-Zma-135427	Zea mays	35.06	2.00e-71	261.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence