iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099257

Ensembl Protein ID

POPTR_0005s20620.1

UniProt Accession

B9H7K3; B9H7K3_POPTR

Genbank Protein ID

EEE93657.1

Protein Name

PHD finger family protein

Genbank Nucleotide ID

CM000341

Gene Name

POPTRDRAFT_559297; POPTR_0005s20620g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s20620	POPTR_0005s20620.1	POPTR_0005s20620.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.30e-15	58.4	404	449

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 4    ClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           C  C   ++d+ ++v C+ C++++H  C+ ++   ++p+ + w+C++C+
   Q: 404  CRGCLTDKDDD-KIVLCDGCDHAYHLYCMIPP-RISVPKGK-WFCRRCD 449
           66677777765.7*******************.*******7.******7 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MVGGEGTSNG EGAKERVQHL NMEAMDNGFG NDGGDASSGG SEGFRTYKRR RNMRSSSDSK 60
GQEDGKCFME AASRLSDQES GYCNADKSPL MGQMANGTHS TAKGHAGVLS NGALDESRHH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTTGGTG GAGAGGGAAC AAGCAATGGC GAGGGTGCAA AAGAAAGGGT TCAGCACTTA 60
AATATGGAAG CAATGGACAA TGGGTTTGGA AATGATGGTG GTGATGCAAG CTCTGGGGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF00628--PHD

SMART

SM00249--PHD

Gene Ontology

GO:0008270--F:zinc ion binding

KEGG

pop:POPTR_0005s20620g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003036	Amborella trichopoda	33.33	3.00e-45	176.00
IUUC-Aly-005677	Arabidopsis lyrata	40.54	1.00e-96	347.00
IUUC-Ath-007282	Arabidopsis thaliana	40.04	8.00e-95	340.00
IUUC-Oba-075978	Oryza barthii	33.17	2.00e-61	229.00
IUUC-Ogu-078286	Oryza glumaepatula	33.67	2.00e-62	233.00
IUUC-Oin-079536	Oryza indica	33.42	5.00e-62	231.00
IUUC-Olo-081087	Oryza longistaminata	33.42	3.00e-61	229.00
IUUC-Ome-081892	Oryza meridionalis	33.17	2.00e-61	229.00
IUUC-Oni-082124	Oryza nivara	33.42	4.00e-62	231.00
IUUC-Opu-084017	Oryza punctata	33.67	7.00e-61	228.00
IUUC-Oru-084542	Oryza rufipogon	33.42	5.00e-62	231.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence