iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Lpe-051554

Ensembl Protein ID

LPERR04G25190.1

UniProt Accession

A0A0D9WB67; A0A0D9WB67_9ORYZ

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
LPERR04G25190	LPERR04G25190.1	LPERR04G25190.1
LPERR04G25190	LPERR04G25190.2	LPERR04G25190.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-37	126.5	143	181
UBD/Beta-Prp	3.30e-57	194.8	15	275

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D+++k+WDl+ g++l+
   Q: 143  GHTRGVNAIRFtPDgRWVVSGGEDNVVKLWDLTAGKQLH 181
           8***********99999******************9987 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvls 99
            +h+s ++c+k+  + +++l+tg++d+++ +w + +++ + slsgh+++v +v+f++++ + + g+  +tik+wdl+  k+v+tl+gh ++ +s
   Q: 15   VAHSSNVNCLKIgRKTSRVLVTGGEDHKVNLWAIGKPNSILSLSGHTSAVESVNFDSTEVFVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCMS 108
           478899999999999999999***************9*9******************99999999999************************** PP
   S: 100  lsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngk 193
           ++f+p g++++sGs d  +++wd++ + c++ t +gh++ vn +++ pdg+ +vsG+ D++v+lWdl  gk l++++  h++++++++f++  +
   Q: 109  VDFHPFGEFFASGSLDTNLKIWDIRRKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNVVKLWDLTAGKQLHEFKC-HEGQIQCIDFHPHEF 200
           *****99***********************9.99**************99**************************98.************99* PP
   S: 194  elvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvis 269
            l++gs d+tvk+wdl+t e + +    t+ v+s+ f p++  l++g  ++s++++  +   +  t+    s+++ 
   Q: 201  LLATGSADKTVKFWDLETFELIGSTGPETTGVRSMTFNPDGRSLLCG-LHESLKVFSWEPIRCHDTVDVGWSRLSD 275
           *****************99999999999999****999999999998.5778888655665555555555555544 PP

Organism

Leersia perrieri

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTNTKRAYK LQEFVAHSSN VNCLKIGRKT SRVLVTGGED HKVNLWAIGK PNSILSLSGH 60
TSAVESVNFD STEVFVAAGA ASGTIKLWDL EEAKIVRTLT GHRSNCMSVD FHPFGEFFAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACGACCA ACACCAAGCG CGCCTACAAG CTCCGTATCC TCGCGAATTC GTTTTCGAGT 60
ATTTTGGGTT TTTTTTTTTT TTNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	67.97	0.00e+00	1241.00
IUUC-Aml-002187	Ailuropoda melanoleuca	53.85	4.00e-103	368.00
IUUC-Atr-002899	Amborella trichopoda	71.05	0.00e+00	658.00
IUUC-Apl-003305	Anas platyrhynchos	52.20	3.00e-102	365.00
IUUC-Aca-004635	Anolis carolinensis	51.99	4.00e-92	331.00
IUUC-Aly-005711	Arabidopsis lyrata	65.50	0.00e+00	646.00
IUUC-Ath-007323	Arabidopsis thaliana	50.64	0.00e+00	762.00
IUUC-Acl-008307	Aspergillus clavatus	31.91	4.00e-30	125.00
IUUC-Bgr-012225	Blumeria graminis	30.87	5.00e-29	122.00
IUUC-Bta-012527	Bos taurus	54.52	4.00e-106	378.00
IUUC-Bdi-014652	Brachypodium distachyon	79.85	0.00e+00	1484.00
IUUC-Bol-016374	Brassica oleracea	61.24	0.00e+00	631.00
IUUC-Bra-017390	Brassica rapa	60.44	1.00e-179	622.00
IUUC-Cja-019706	Callithrix jacchus	54.52	1.00e-105	376.00
IUUC-Cfa-020139	Canis familiaris	46.48	1.00e-98	353.00
IUUC-Cpo-021710	Cavia porcellus	54.18	6.00e-106	377.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	44.34	3.00e-83	302.00
IUUC-Csa-023546	Chlorocebus sabaeus	54.33	4.00e-102	364.00
IUUC-Cin-025156	Ciona intestinalis	46.84	1.00e-88	320.00
IUUC-Csv-025962	Ciona savignyi	50.00	1.00e-89	322.00
IUUC-Dre-028215	Danio rerio	52.96	3.00e-104	372.00
IUUC-Dno-029314	Dasypus novemcinctus	54.85	9.00e-106	377.00
IUUC-Dor-030482	Dipodomys ordii	54.52	1.00e-106	379.00
IUUC-Dme-032188	Drosophila melanogaster	38.87	5.00e-59	222.00
IUUC-Eca-034143	Equus caballus	54.18	4.00e-103	368.00
IUUC-Fca-035924	Felis catus	54.85	3.00e-106	378.00
IUUC-Fal-037387	Ficedula albicollis	52.81	3.00e-105	375.00
IUUC-Gmo-038692	Gadus morhua	52.67	9.00e-104	370.00
IUUC-Gga-040597	Gallus gallus	53.51	4.00e-105	375.00
IUUC-Gac-042004	Gasterosteus aculeatus	50.00	1.00e-99	357.00
IUUC-Gma-044134	Glycine max	73.46	0.00e+00	663.00
IUUC-Ggo-044761	Gorilla gorilla	54.52	1.00e-105	376.00
IUUC-Hsa-045698	Homo sapiens	49.58	2.00e-106	379.00
IUUC-Hvu-047649	Hordeum vulgare	78.96	0.00e+00	1462.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	54.52	2.00e-106	379.00
IUUC-Lch-049674	Latimeria chalumnae	47.62	7.00e-110	390.00
IUUC-Loc-052623	Lepisosteus oculatus	54.09	5.00e-101	361.00
IUUC-Laf-054587	Loxodonta africana	54.52	4.00e-106	378.00
IUUC-Mcc-055851	Macaca mulatta	54.52	1.00e-105	376.00
IUUC-Meu-056704	Macropus eugenii	54.52	7.00e-106	377.00
IUUC-Mtr-058053	Medicago truncatula	73.42	0.00e+00	683.00
IUUC-Mmr-061154	Microcebus murinus	54.52	6.00e-106	377.00
IUUC-Mdo-062365	Monodelphis domestica	54.85	1.00e-105	376.00
IUUC-Mmu-063754	Mus musculus	54.05	1.00e-106	380.00
IUUC-Mac-064439	Musa acuminata	66.60	0.00e+00	666.00
IUUC-Mpu-066245	Mustela putorius furo	55.18	2.00e-106	379.00
IUUC-Mlu-067692	Myotis lucifugus	53.90	2.00e-105	375.00
IUUC-Nle-070051	Nomascus leucogenys	54.18	1.00e-104	373.00
IUUC-Opr-070855	Ochotona princeps	54.18	9.00e-106	377.00
IUUC-Ont-071883	Oreochromis niloticus	51.49	5.00e-100	358.00
IUUC-Oan-073293	Ornithorhynchus anatinus	54.80	4.00e-102	364.00
IUUC-Ocu-074644	Oryctolagus cuniculus	54.52	2.00e-106	379.00
IUUC-Oba-075448	Oryza barthii	79.41	0.00e+00	1436.00
IUUC-Obr-076385	Oryza brachyantha	90.30	0.00e+00	1706.00
IUUC-Ogl-077427	Oryza glaberrima	89.78	0.00e+00	1697.00
IUUC-Ogu-078428	Oryza glumaepatula	77.02	0.00e+00	1222.00
IUUC-Oin-079811	Oryza indica	88.43	0.00e+00	1684.00
IUUC-Olo-080245	Oryza longistaminata	85.17	0.00e+00	1594.00
IUUC-Ome-081239	Oryza meridionalis	86.11	0.00e+00	1571.00
IUUC-Oni-082640	Oryza nivara	79.41	0.00e+00	1436.00
IUUC-Opu-083748	Oryza punctata	82.23	0.00e+00	1509.00
IUUC-Oru-084609	Oryza rufipogon	79.41	0.00e+00	1436.00
IUUC-Osa-085988	Oryza sativa	84.98	0.00e+00	1566.00
IUUC-Ola-087483	Oryzias latipes	50.00	5.00e-95	341.00
IUUC-Oga-087964	Otolemur garnettii	54.52	4.00e-106	378.00
IUUC-Ptr-091387	Pan troglodytes	49.58	2.00e-106	379.00
IUUC-Pan-092623	Papio anubis	54.52	1.00e-105	376.00
IUUC-Ppa-095379	Physcomitrella patens	82.67	3.00e-157	548.00
IUUC-Pfo-096755	Poecilia formosa	48.81	1.00e-100	359.00
IUUC-Pab-097564	Pongo abelii	54.52	3.00e-105	375.00
IUUC-Pop-099149	Populus trichocarpa	71.61	0.00e+00	680.00
IUUC-Pca-100357	Procavia capensis	58.33	3.00e-77	282.00
IUUC-Ppe-101237	Prunus persica	54.37	0.00e+00	897.00
IUUC-Pva-102397	Pteropus vampyrus	50.17	3.00e-93	335.00
IUUC-Rno-105349	Rattus norvegicus	54.05	1.00e-106	380.00
IUUC-Smo-109409	Selaginella moellendorffii	78.39	8.00e-160	556.00
IUUC-Sit-110360	Setaria italica	80.06	0.00e+00	1474.00
IUUC-Sly-111307	Solanum lycopersicum	71.59	0.00e+00	667.00
IUUC-Stu-112462	Solanum tuberosum	70.51	0.00e+00	642.00
IUUC-Sar-112953	Sorex araneus	46.49	2.00e-59	223.00
IUUC-Sbi-114389	Sorghum bicolor	69.52	7.00e-144	504.00
IUUC-Ssc-115949	Sus scrofa	48.77	1.00e-49	190.00
IUUC-Tgu-117461	Taeniopygia guttata	52.81	8.00e-106	377.00
IUUC-Tru-117865	Takifugu rubripes	50.00	2.00e-93	336.00
IUUC-Tsy-119036	Tarsius syrichta	60.33	3.00e-41	162.00
IUUC-Tni-120903	Tetraodon nigroviridis	49.83	4.00e-92	331.00
IUUC-Tca-121185	Theobroma cacao	55.13	0.00e+00	934.00
IUUC-Tae-125307	Triticum aestivum	80.02	0.00e+00	1476.00
IUUC-Tur-126411	Triticum urartu	68.79	0.00e+00	1224.00
IUUC-Ttr-128172	Tursiops truncatus	54.52	2.00e-106	379.00
IUUC-Vvi-131489	Vitis vinifera	75.16	0.00e+00	700.00
IUUC-Xma-134133	Xiphophorus maculatus	51.32	6.00e-98	351.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence