iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-006521

Ensembl Protein ID

fgenesh2_kg.8__95__AT5G47010.1

UniProt Accession

D7MQM0; D7MQM0_ARALL

Genbank Protein ID

EFH41410.1

Protein Name

Low-level beta-amylase 1

Genbank Nucleotide ID

GL348720

Gene Name

UPF1; LBA1; ARALYDRAFT_494279

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh2_kg.8__95__AT5G47010.1	fgenesh2_kg.8__95__AT5G47010.1	fgenesh2_kg.8__95__AT5G47010.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/Other	57.27	0.00e+00	939.00	IUUC-Sce-106206

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MDSQQSDLFD TASQPDAVAD AYTFLEFNTQ GDSEFDYPEF RSPTAWPTPS DSISIADVSD 60
RGGGGAAADH HSEASSPSSL SAGAGNGAKV GRGGVGGSGG VSSSSQVDAL AAGMGNLNFE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGATTCTC AACAGAGCGA TCTCTTTGAC ACCGCATCGC AGCCGGACGC GGTGGCTGAC 60
GCGTATACCT TTTTGGAATT CAATACTCAA GGCGATTCAG AGTTCGATTA CCCGGAGTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR006935--Helicase/UvrB_N
IPR014001--Helicase_ATP-bd
IPR027417--P-loop_NTPase
IPR018999--RNA-helicase_UPF1_UPF2-interct

PROSITE

PS51192--HELICASE_ATP_BIND_1

Pfam

PF04851--ResIII
PF09416--UPF1_Zn_bind

Gene Ontology

GO:0005829--C:cytosol
GO:0000932--C:P-body
GO:0005886--C:plasma membrane
GO:0009506--C:plasmodesma
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0004386--F:helicase activity
GO:0003729--F:mRNA binding
GO:0008270--F:zinc ion binding
GO:0042742--P:defense response to bacterium
GO:0009867--P:jasmonic acid mediated signaling pathway
GO:0048571--P:long-day photoperiodism
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0009611--P:response to wounding
GO:0009863--P:salicylic acid mediated signaling pathway
GO:0010182--P:sugar mediated signaling pathway

KEGG

aly:ARALYDRAFT_494279

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000680	Aegilops tauschii	80.58	0.00e+00	1698.00
IUUC-Aml-002008	Ailuropoda melanoleuca	71.65	0.00e+00	1259.00
IUUC-Atr-002632	Amborella trichopoda	79.12	0.00e+00	1904.00
IUUC-Apl-003997	Anas platyrhynchos	71.74	0.00e+00	1256.00
IUUC-Aca-004322	Anolis carolinensis	32.75	7.00e-52	198.00
IUUC-Ath-007059	Arabidopsis thaliana	97.77	0.00e+00	2309.00
IUUC-Ago-007801	Ashbya gossypii	57.25	0.00e+00	940.00
IUUC-Acl-008312	Aspergillus clavatus	66.83	0.00e+00	1147.00
IUUC-Afl-008429	Aspergillus flavus	67.28	0.00e+00	1144.00
IUUC-Afu-009092	Aspergillus fumigatus	67.52	0.00e+00	1143.00
IUUC-Ani-009317	Aspergillus nidulans	66.42	0.00e+00	1138.00
IUUC-Ang-009783	Aspergillus niger	67.28	0.00e+00	1143.00
IUUC-Aor-010178	Aspergillus oryzae	67.28	0.00e+00	1144.00
IUUC-Ate-010294	Aspergillus terreus	67.40	0.00e+00	1147.00
IUUC-Ame-010774	Astyanax mexicanus	70.83	9.00e-125	440.00
IUUC-Bgr-012293	Blumeria graminis	64.79	0.00e+00	1133.00
IUUC-Bta-012382	Bos taurus	71.65	0.00e+00	1258.00
IUUC-Bci-013937	Botrytis cinerea	64.85	0.00e+00	1120.00
IUUC-Bdi-014612	Brachypodium distachyon	81.07	0.00e+00	1785.00
IUUC-Bol-015145	Brassica oleracea	91.44	0.00e+00	2107.00
IUUC-Bra-017370	Brassica rapa	90.62	0.00e+00	2074.00
IUUC-Cel-018240	Caenorhabditis elegans	57.40	0.00e+00	948.00
IUUC-Cja-019892	Callithrix jacchus	72.63	0.00e+00	1267.00
IUUC-Cfa-020700	Canis familiaris	71.65	0.00e+00	1258.00
IUUC-Cpo-021510	Cavia porcellus	71.78	0.00e+00	1259.00
IUUC-Cre-022731	Chlamydomonas reinhardtii	65.26	0.00e+00	1068.00
IUUC-Csa-023665	Chlorocebus sabaeus	72.63	0.00e+00	1268.00
IUUC-Cin-025798	Ciona intestinalis	69.44	0.00e+00	1140.00
IUUC-Csv-025901	Ciona savignyi	66.59	0.00e+00	1157.00
IUUC-Cgl-026653	Colletotrichum gloeosporioides	62.89	0.00e+00	1091.00
IUUC-Cne-027014	Cryptococcus neoformans	66.36	0.00e+00	1186.00
IUUC-Dre-028705	Danio rerio	72.66	0.00e+00	1262.00
IUUC-Dor-030369	Dipodomys ordii	70.28	0.00e+00	1218.00
IUUC-Dme-031767	Drosophila melanogaster	64.73	0.00e+00	1148.00
IUUC-Ete-032800	Echinops telfairi	34.08	1.00e-54	207.00
IUUC-Eca-033840	Equus caballus	72.63	0.00e+00	1267.00
IUUC-Fca-035466	Felis catus	71.57	0.00e+00	1254.00
IUUC-Fal-037548	Ficedula albicollis	72.36	0.00e+00	1255.00
IUUC-Fox-038023	Fusarium oxysporum	63.10	0.00e+00	1091.00
IUUC-Gmo-039285	Gadus morhua	70.84	0.00e+00	1243.00
IUUC-Ggr-039810	Gaeumannomyces graminis	62.02	0.00e+00	1124.00
IUUC-Gga-040972	Gallus gallus	72.63	0.00e+00	1268.00
IUUC-Gac-042075	Gasterosteus aculeatus	62.80	0.00e+00	1259.00
IUUC-Gma-042713	Glycine max	81.41	0.00e+00	1994.00
IUUC-Ggo-045398	Gorilla gorilla	72.63	0.00e+00	1266.00
IUUC-Hsa-046152	Homo sapiens	72.63	0.00e+00	1268.00
IUUC-Hvu-047555	Hordeum vulgare	93.12	0.00e+00	901.00
IUUC-Itr-048247	Ictidomys tridecemlineatus	71.96	0.00e+00	1248.00
IUUC-Kpa-049205	Komagataella pastoris	50.37	0.00e+00	761.00
IUUC-Lch-049587	Latimeria chalumnae	73.25	0.00e+00	785.00
IUUC-Lpe-051059	Leersia perrieri	81.30	0.00e+00	1786.00
IUUC-Loc-051911	Lepisosteus oculatus	72.63	0.00e+00	1265.00
IUUC-Lma-053007	Leptosphaeria maculans	66.71	0.00e+00	1125.00
IUUC-Laf-054234	Loxodonta africana	71.65	0.00e+00	1258.00
IUUC-Mcc-054762	Macaca mulatta	71.65	0.00e+00	1258.00
IUUC-Meu-056677	Macropus eugenii	70.29	4.00e-132	465.00
IUUC-Mor-057147	Magnaporthe oryzae	65.32	0.00e+00	1119.00
IUUC-Mpo-057314	Magnaporthe poae	61.90	0.00e+00	1125.00
IUUC-Mtr-058329	Medicago truncatula	82.29	0.00e+00	2035.00
IUUC-Mla-059094	Melampsora laricipopulina	62.08	0.00e+00	631.00
IUUC-Mga-060126	Meleagris gallopavo	71.17	0.00e+00	1238.00
IUUC-Mvi-060373	Microbotryum violaceum	67.15	0.00e+00	1227.00
IUUC-Mmr-060628	Microcebus murinus	71.65	0.00e+00	1258.00
IUUC-Mdo-061858	Monodelphis domestica	72.63	0.00e+00	1265.00
IUUC-Mmu-064116	Mus musculus	72.50	0.00e+00	1268.00
IUUC-Mac-065136	Musa acuminata	82.03	0.00e+00	1844.00
IUUC-Mpu-066463	Mustela putorius furo	72.63	0.00e+00	1268.00
IUUC-Mlu-068098	Myotis lucifugus	72.63	0.00e+00	1268.00
IUUC-Nfi-068370	Neosartorya fischeri	67.52	0.00e+00	1143.00
IUUC-Ncr-068792	Neurospora crassa	64.99	0.00e+00	1106.00
IUUC-Nle-070102	Nomascus leucogenys	72.63	0.00e+00	1261.00
IUUC-Opr-070620	Ochotona princeps	69.05	0.00e+00	1167.00
IUUC-Ont-072685	Oreochromis niloticus	63.44	0.00e+00	1257.00
IUUC-Oan-073665	Ornithorhynchus anatinus	70.70	0.00e+00	1264.00
IUUC-Ocu-074154	Oryctolagus cuniculus	33.56	1.00e-55	211.00
IUUC-Oba-075075	Oryza barthii	78.73	0.00e+00	1514.00
IUUC-Obr-076183	Oryza brachyantha	81.70	0.00e+00	1609.00
IUUC-Ogl-077691	Oryza glaberrima	82.80	0.00e+00	1815.00
IUUC-Ogu-078423	Oryza glumaepatula	82.42	0.00e+00	1793.00
IUUC-Oin-080107	Oryza indica	82.81	0.00e+00	1817.00
IUUC-Olo-080269	Oryza longistaminata	82.42	0.00e+00	1726.00
IUUC-Ome-081779	Oryza meridionalis	82.51	0.00e+00	1795.00
IUUC-Oni-082366	Oryza nivara	82.81	0.00e+00	1817.00
IUUC-Opu-083958	Oryza punctata	79.79	0.00e+00	1783.00
IUUC-Oru-084182	Oryza rufipogon	82.81	0.00e+00	1817.00
IUUC-Osa-085285	Oryza sativa	82.92	0.00e+00	1822.00
IUUC-Ola-086954	Oryzias latipes	68.44	0.00e+00	1216.00
IUUC-Olu-087685	Ostreococcus lucimarinus	61.38	0.00e+00	1003.00
IUUC-Oga-088591	Otolemur garnettii	72.63	0.00e+00	1267.00
IUUC-Oar-089417	Ovis aries	71.53	0.00e+00	1256.00
IUUC-Ptr-091510	Pan troglodytes	71.89	0.00e+00	1247.00
IUUC-Pan-091886	Papio anubis	72.63	0.00e+00	1268.00
IUUC-Psi-093755	Pelodiscus sinensis	70.58	0.00e+00	849.00
IUUC-Pma-094470	Petromyzon marinus	71.22	0.00e+00	1266.00
IUUC-Pno-094963	Phaeosphaeria nodorum	66.67	0.00e+00	1121.00
IUUC-Ppa-095479	Physcomitrella patens	76.13	0.00e+00	1707.00
IUUC-Pfo-097456	Poecilia formosa	62.99	0.00e+00	1262.00
IUUC-Pab-098075	Pongo abelii	68.00	0.00e+00	1158.00
IUUC-Pop-099557	Populus trichocarpa	81.32	0.00e+00	2008.00
IUUC-Pca-100717	Procavia capensis	75.25	7.00e-137	481.00
IUUC-Ppe-101675	Prunus persica	82.08	0.00e+00	2051.00
IUUC-Pva-103029	Pteropus vampyrus	73.05	0.00e+00	961.00
IUUC-Pgr-103318	Puccinia graminis	67.07	0.00e+00	1145.00
IUUC-Ptt-103956	Puccinia triticina	67.19	0.00e+00	1146.00
IUUC-Pte-104399	Pyrenophora teres	67.16	0.00e+00	1126.00
IUUC-Pyt-104749	Pyrenophora triticirepentis	67.16	0.00e+00	1127.00
IUUC-Rno-105784	Rattus norvegicus	72.50	0.00e+00	1268.00
IUUC-Sce-106206	Saccharomyces cerevisiae	57.27	0.00e+00	926.00
IUUC-Sha-106566	Sarcophilus harrisii	71.60	0.00e+00	1254.00
IUUC-Sja-107721	Schizosaccharomyces japonicus	62.27	0.00e+00	1054.00
IUUC-Spo-108258	Schizosaccharomyces pombe	58.44	0.00e+00	1010.00
IUUC-Ssl-108640	Sclerotinia sclerotiorum	61.27	0.00e+00	977.00
IUUC-Sit-109760	Setaria italica	81.74	0.00e+00	1812.00
IUUC-Sly-111807	Solanum lycopersicum	80.38	0.00e+00	1975.00
IUUC-Stu-112869	Solanum tuberosum	80.66	0.00e+00	1790.00
IUUC-Sar-112950	Sorex araneus	32.59	1.00e-41	164.00
IUUC-Sbi-114863	Sorghum bicolor	81.63	0.00e+00	1791.00
IUUC-Sre-115092	Sporisorium reilianum	70.05	0.00e+00	1192.00
IUUC-Tgu-117214	Taeniopygia guttata	66.22	0.00e+00	1122.00
IUUC-Tru-118386	Takifugu rubripes	70.43	0.00e+00	1234.00
IUUC-Tsy-119550	Tarsius syrichta	67.02	1.00e-111	397.00
IUUC-Tni-120212	Tetraodon nigroviridis	62.54	0.00e+00	1209.00
IUUC-Tca-121353	Theobroma cacao	81.40	0.00e+00	1986.00
IUUC-Tre-122245	Trichoderma reesei	32.57	2.00e-49	191.00
IUUC-Tvi-122452	Trichoderma virens	63.42	0.00e+00	1079.00
IUUC-Tae-123692	Triticum aestivum	82.03	0.00e+00	1803.00
IUUC-Tur-126770	Triticum urartu	71.40	0.00e+00	1596.00
IUUC-Tme-126956	Tuber melanosporum	68.53	0.00e+00	1178.00
IUUC-Tbe-127873	Tupaia belangeri	32.01	9.00e-48	184.00
IUUC-Ttr-128212	Tursiops truncatus	67.94	0.00e+00	1150.00
IUUC-Uma-129327	Ustilago maydis	67.52	0.00e+00	1199.00
IUUC-Vda-129858	Verticillium dahliae	63.46	0.00e+00	1067.00
IUUC-Vpa-130743	Vicugna pacos	32.46	9.00e-50	191.00
IUUC-Vvi-131222	Vitis vinifera	81.83	0.00e+00	1986.00
IUUC-Xtr-131800	Xenopus tropicalis	64.57	0.00e+00	1004.00
IUUC-Xma-133216	Xiphophorus maculatus	62.99	0.00e+00	1261.00
IUUC-Yli-134482	Yarrowia lipolytica	53.74	0.00e+00	887.00
IUUC-Zma-134802	Zea mays	80.79	0.00e+00	1818.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence