iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099557

Ensembl Protein ID

POPTR_0003s08460.1

UniProt Accession

B9N2T2; B9N2T2_POPTR

Genbank Protein ID

ERP63394.1

Protein Name

RNA helicase family protein

Genbank Nucleotide ID

CM000339

Gene Name

POPTRDRAFT_743214; POPTR_0003s08460g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0003s08460	POPTR_0003s08460.1	POPTR_0003s08460.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/Other	56.90	0.00e+00	956.00	IUUC-Sce-106206

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDNQDNNLYE TASQPDTATD AYTFLEFNTQ GESDFDYPEF RSPVAWPTPS DSLGATSSAV 60
DPTSSDHRTA ASTPDLHSDS LAASPVASKS AARGGGANSG TQGVVEGLVA SIGGLNFEET 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTCGCTCTC CAAACCCTAA CCCTAAAGAC AAAAATCCTA ATCGGATCAT AATCTCTTAT 60
AATCTCCATG GATAACCAAG ACAATAACCT CTACGAAACG GCCTCGCAGC CAGACACAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0067--ATP-binding
KW-0181--Complete proteome
KW-0347--Helicase
KW-0378--Hydrolase
KW-0547--Nucleotide-binding
KW-1185--Reference proteome

Interpro

IPR006935--Helicase/UvrB_N
IPR014001--Helicase_ATP-bd
IPR027417--P-loop_NTPase
IPR018999--RNA-helicase_UPF1_UPF2-interct

PROSITE

PS51192--HELICASE_ATP_BIND_1

Pfam

PF04851--ResIII
PF09416--UPF1_Zn_bind

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0004386--F:helicase activity
GO:0008270--F:zinc ion binding
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

KEGG

pop:POPTR_0003s08460g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000680	Aegilops tauschii	81.67	0.00e+00	1768.00
IUUC-Aml-002008	Ailuropoda melanoleuca	71.74	0.00e+00	1269.00
IUUC-Atr-002632	Amborella trichopoda	82.34	0.00e+00	1998.00
IUUC-Apl-003997	Anas platyrhynchos	71.74	0.00e+00	1268.00
IUUC-Aca-004322	Anolis carolinensis	32.61	6.00e-54	205.00
IUUC-Aly-006521	Arabidopsis lyrata	80.62	0.00e+00	1978.00
IUUC-Ath-007059	Arabidopsis thaliana	79.31	0.00e+00	1968.00
IUUC-Ago-007801	Ashbya gossypii	55.08	0.00e+00	939.00
IUUC-Acl-008312	Aspergillus clavatus	65.74	0.00e+00	1137.00
IUUC-Afl-008429	Aspergillus flavus	61.98	0.00e+00	1133.00
IUUC-Afu-009092	Aspergillus fumigatus	66.54	0.00e+00	1135.00
IUUC-Ani-009317	Aspergillus nidulans	65.85	0.00e+00	1134.00
IUUC-Ang-009783	Aspergillus niger	66.30	0.00e+00	1134.00
IUUC-Aor-010178	Aspergillus oryzae	61.98	0.00e+00	1133.00
IUUC-Ate-010294	Aspergillus terreus	66.30	0.00e+00	1135.00
IUUC-Ame-010774	Astyanax mexicanus	69.10	8.00e-124	437.00
IUUC-Bgr-012293	Blumeria graminis	65.48	0.00e+00	1128.00
IUUC-Bta-012382	Bos taurus	71.74	0.00e+00	1270.00
IUUC-Bci-013937	Botrytis cinerea	65.04	0.00e+00	1124.00
IUUC-Bdi-014612	Brachypodium distachyon	83.62	0.00e+00	1864.00
IUUC-Bol-015145	Brassica oleracea	78.54	0.00e+00	1874.00
IUUC-Bra-017370	Brassica rapa	77.57	0.00e+00	1842.00
IUUC-Cel-018240	Caenorhabditis elegans	56.13	0.00e+00	940.00
IUUC-Cja-019892	Callithrix jacchus	72.84	0.00e+00	1276.00
IUUC-Cfa-020700	Canis familiaris	71.74	0.00e+00	1270.00
IUUC-Cpo-021510	Cavia porcellus	71.86	0.00e+00	1270.00
IUUC-Cre-022731	Chlamydomonas reinhardtii	66.00	0.00e+00	1074.00
IUUC-Csa-023665	Chlorocebus sabaeus	72.84	0.00e+00	1277.00
IUUC-Cin-025798	Ciona intestinalis	71.13	0.00e+00	1151.00
IUUC-Csv-025901	Ciona savignyi	65.42	0.00e+00	1164.00
IUUC-Cgl-026653	Colletotrichum gloeosporioides	63.47	0.00e+00	1090.00
IUUC-Cne-027014	Cryptococcus neoformans	65.98	0.00e+00	1189.00
IUUC-Dre-028705	Danio rerio	72.75	0.00e+00	1273.00
IUUC-Dor-030369	Dipodomys ordii	70.49	0.00e+00	1225.00
IUUC-Dme-031767	Drosophila melanogaster	64.75	0.00e+00	1142.00
IUUC-Ete-032800	Echinops telfairi	34.30	4.00e-55	209.00
IUUC-Eca-033840	Equus caballus	72.84	0.00e+00	1275.00
IUUC-Fca-035466	Felis catus	71.65	0.00e+00	1266.00
IUUC-Fal-037548	Ficedula albicollis	72.60	0.00e+00	1265.00
IUUC-Fox-038023	Fusarium oxysporum	63.59	0.00e+00	1088.00
IUUC-Gmo-039285	Gadus morhua	70.92	0.00e+00	1254.00
IUUC-Ggr-039810	Gaeumannomyces graminis	63.30	0.00e+00	1117.00
IUUC-Gga-040972	Gallus gallus	72.84	0.00e+00	1277.00
IUUC-Gac-042075	Gasterosteus aculeatus	61.76	0.00e+00	1265.00
IUUC-Gma-042713	Glycine max	85.75	0.00e+00	2107.00
IUUC-Ggo-045398	Gorilla gorilla	72.84	0.00e+00	1274.00
IUUC-Hsa-046152	Homo sapiens	72.84	0.00e+00	1277.00
IUUC-Hvu-047555	Hordeum vulgare	93.96	0.00e+00	911.00
IUUC-Itr-048247	Ictidomys tridecemlineatus	62.22	0.00e+00	1259.00
IUUC-Kpa-049205	Komagataella pastoris	50.50	0.00e+00	754.00
IUUC-Lch-049587	Latimeria chalumnae	73.25	0.00e+00	793.00
IUUC-Lpe-051059	Leersia perrieri	85.51	0.00e+00	1877.00
IUUC-Loc-051911	Lepisosteus oculatus	72.84	0.00e+00	1275.00
IUUC-Lma-053007	Leptosphaeria maculans	64.75	0.00e+00	1121.00
IUUC-Laf-054234	Loxodonta africana	71.74	0.00e+00	1271.00
IUUC-Mcc-054762	Macaca mulatta	71.74	0.00e+00	1269.00
IUUC-Meu-056677	Macropus eugenii	69.33	2.00e-132	466.00
IUUC-Mor-057147	Magnaporthe oryzae	64.58	0.00e+00	1116.00
IUUC-Mpo-057314	Magnaporthe poae	63.18	0.00e+00	1119.00
IUUC-Mtr-058329	Medicago truncatula	85.73	0.00e+00	2128.00
IUUC-Mla-059094	Melampsora laricipopulina	57.02	0.00e+00	627.00
IUUC-Mga-060126	Meleagris gallopavo	71.29	0.00e+00	1250.00
IUUC-Mvi-060373	Microbotryum violaceum	67.85	0.00e+00	1222.00
IUUC-Mmr-060628	Microcebus murinus	71.74	0.00e+00	1270.00
IUUC-Mdo-061858	Monodelphis domestica	72.84	0.00e+00	1273.00
IUUC-Mmu-064116	Mus musculus	72.72	0.00e+00	1277.00
IUUC-Mac-065136	Musa acuminata	85.16	0.00e+00	1928.00
IUUC-Mpu-066463	Mustela putorius furo	72.84	0.00e+00	1277.00
IUUC-Mlu-068098	Myotis lucifugus	72.84	0.00e+00	1276.00
IUUC-Nfi-068370	Neosartorya fischeri	66.54	0.00e+00	1135.00
IUUC-Ncr-068792	Neurospora crassa	64.13	0.00e+00	1101.00
IUUC-Nle-070102	Nomascus leucogenys	72.84	0.00e+00	1271.00
IUUC-Opr-070620	Ochotona princeps	68.85	0.00e+00	1167.00
IUUC-Ont-072685	Oreochromis niloticus	72.26	0.00e+00	1269.00
IUUC-Oan-073665	Ornithorhynchus anatinus	70.09	0.00e+00	1273.00
IUUC-Ocu-074154	Oryctolagus cuniculus	33.11	4.00e-56	213.00
IUUC-Oba-075075	Oryza barthii	80.26	0.00e+00	1564.00
IUUC-Obr-076183	Oryza brachyantha	83.91	0.00e+00	1677.00
IUUC-Ogl-077691	Oryza glaberrima	84.62	0.00e+00	1879.00
IUUC-Ogu-078423	Oryza glumaepatula	86.25	0.00e+00	1888.00
IUUC-Oin-080107	Oryza indica	84.63	0.00e+00	1879.00
IUUC-Olo-080269	Oryza longistaminata	84.22	0.00e+00	1782.00
IUUC-Ome-081779	Oryza meridionalis	86.25	0.00e+00	1885.00
IUUC-Oni-082366	Oryza nivara	84.63	0.00e+00	1881.00
IUUC-Opu-083958	Oryza punctata	81.07	0.00e+00	1848.00
IUUC-Oru-084182	Oryza rufipogon	84.63	0.00e+00	1878.00
IUUC-Osa-085285	Oryza sativa	84.57	0.00e+00	1881.00
IUUC-Ola-086954	Oryzias latipes	67.67	0.00e+00	1230.00
IUUC-Olu-087685	Ostreococcus lucimarinus	61.62	0.00e+00	998.00
IUUC-Oga-088591	Otolemur garnettii	72.84	0.00e+00	1277.00
IUUC-Oar-089417	Ovis aries	71.62	0.00e+00	1267.00
IUUC-Ptr-091510	Pan troglodytes	72.10	0.00e+00	1256.00
IUUC-Pan-091886	Papio anubis	72.84	0.00e+00	1277.00
IUUC-Psi-093755	Pelodiscus sinensis	70.40	0.00e+00	856.00
IUUC-Pma-094470	Petromyzon marinus	69.92	0.00e+00	1270.00
IUUC-Pno-094963	Phaeosphaeria nodorum	65.80	0.00e+00	1116.00
IUUC-Ppa-095479	Physcomitrella patens	76.30	0.00e+00	1714.00
IUUC-Pfo-097456	Poecilia formosa	63.74	0.00e+00	1274.00
IUUC-Pab-098075	Pongo abelii	68.09	0.00e+00	1169.00
IUUC-Pca-100717	Procavia capensis	74.92	1.00e-138	486.00
IUUC-Ppe-101675	Prunus persica	87.83	0.00e+00	2174.00
IUUC-Pva-103029	Pteropus vampyrus	73.66	0.00e+00	970.00
IUUC-Pgr-103318	Puccinia graminis	62.50	0.00e+00	1152.00
IUUC-Ptt-103956	Puccinia triticina	62.68	0.00e+00	1152.00
IUUC-Pte-104399	Pyrenophora teres	59.85	0.00e+00	1122.00
IUUC-Pyt-104749	Pyrenophora triticirepentis	59.85	0.00e+00	1123.00
IUUC-Rno-105784	Rattus norvegicus	62.75	0.00e+00	1279.00
IUUC-Sce-106206	Saccharomyces cerevisiae	56.90	0.00e+00	923.00
IUUC-Sha-106566	Sarcophilus harrisii	71.57	0.00e+00	1263.00
IUUC-Sja-107721	Schizosaccharomyces japonicus	61.90	0.00e+00	1047.00
IUUC-Spo-108258	Schizosaccharomyces pombe	57.89	0.00e+00	1011.00
IUUC-Ssl-108640	Sclerotinia sclerotiorum	61.83	0.00e+00	972.00
IUUC-Sit-109760	Setaria italica	84.11	0.00e+00	1881.00
IUUC-Sly-111807	Solanum lycopersicum	84.82	0.00e+00	2053.00
IUUC-Stu-112869	Solanum tuberosum	86.07	0.00e+00	1860.00
IUUC-Sar-112950	Sorex araneus	31.92	3.00e-42	166.00
IUUC-Sbi-114863	Sorghum bicolor	83.82	0.00e+00	1865.00
IUUC-Sre-115092	Sporisorium reilianum	70.05	0.00e+00	1205.00
IUUC-Ssc-115400	Sus scrofa	26.92	2.40e-02	34.30
IUUC-Tgu-117214	Taeniopygia guttata	66.79	0.00e+00	1139.00
IUUC-Tru-118386	Takifugu rubripes	66.02	0.00e+00	1244.00
IUUC-Tsy-119550	Tarsius syrichta	68.07	8.00e-113	400.00
IUUC-Tni-120212	Tetraodon nigroviridis	61.55	0.00e+00	1227.00
IUUC-Tca-121353	Theobroma cacao	87.19	0.00e+00	2100.00
IUUC-Tre-122245	Trichoderma reesei	33.26	5.00e-51	196.00
IUUC-Tvi-122452	Trichoderma virens	62.56	0.00e+00	1073.00
IUUC-Tae-123692	Triticum aestivum	83.97	0.00e+00	1870.00
IUUC-Tur-126770	Triticum urartu	84.55	0.00e+00	1025.00
IUUC-Tme-126956	Tuber melanosporum	67.46	0.00e+00	1167.00
IUUC-Tbe-127873	Tupaia belangeri	31.54	9.00e-48	184.00
IUUC-Ttr-128212	Tursiops truncatus	68.15	0.00e+00	1162.00
IUUC-Uma-129327	Ustilago maydis	70.05	0.00e+00	1207.00
IUUC-Vda-129858	Verticillium dahliae	64.15	0.00e+00	1068.00
IUUC-Vpa-130743	Vicugna pacos	32.24	4.00e-51	196.00
IUUC-Vvi-131222	Vitis vinifera	88.21	0.00e+00	2109.00
IUUC-Xtr-131800	Xenopus tropicalis	65.50	0.00e+00	1014.00
IUUC-Xma-133216	Xiphophorus maculatus	63.74	0.00e+00	1273.00
IUUC-Yli-134482	Yarrowia lipolytica	52.59	0.00e+00	877.00
IUUC-Zma-134802	Zea mays	80.61	0.00e+00	1956.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence