iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vvi-131222

Ensembl Protein ID

VIT_02s0012g00480.t01

UniProt Accession

D7TTH5; D7TTH5_VITVI

Genbank Protein ID

CBI33955.3

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

FN596247

Gene Name

UPF1; VIT_02s0012g00480

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_02s0012g00480	VIT_02s0012g00480.t01	VIT_02s0012g00480.t01

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/Other	56.27	0.00e+00	940.00	IUUC-Sce-106206

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MDSQPNNLYD TASQPDTGND AYTFIEFNTQ GEDFDYPDFR DPIRPSAWPT PSDSISDAAD 60
HQSDASPVSA APGSATKARG AAGSSSSSQA AVDALAAGMS GLNFEETGDD DNYEYGKGDF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACAGCCTCTC TCTCTCTTCC CCCAAACCTT TCTGTCATTC TTTCCTCACC AAACCCTAAC 60
CCTAACCATA ACCCCTCTTC CTTTTTCAAA CCACCCAAAT CCAGTACCCT AACCCTAAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR006935--Helicase/UvrB_N
IPR014001--Helicase_ATP-bd
IPR027417--P-loop_NTPase
IPR018999--RNA-helicase_UPF1_UPF2-interct

PROSITE

PS51192--HELICASE_ATP_BIND_1

Pfam

PF04851--ResIII
PF09416--UPF1_Zn_bind

Gene Ontology

GO:0005829--C:cytosol
GO:0000932--C:P-body
GO:0005886--C:plasma membrane
GO:0009506--C:plasmodesma
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0004386--F:helicase activity
GO:0003729--F:mRNA binding
GO:0008270--F:zinc ion binding
GO:0042742--P:defense response to bacterium
GO:0009867--P:jasmonic acid mediated signaling pathway
GO:0048571--P:long-day photoperiodism
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0009611--P:response to wounding
GO:0009863--P:salicylic acid mediated signaling pathway
GO:0010182--P:sugar mediated signaling pathway

KEGG

vvi:100264343

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000680	Aegilops tauschii	85.14	0.00e+00	1829.00
IUUC-Aml-002008	Ailuropoda melanoleuca	68.36	0.00e+00	1280.00
IUUC-Atr-002632	Amborella trichopoda	87.76	0.00e+00	2127.00
IUUC-Apl-003997	Anas platyrhynchos	68.36	0.00e+00	1279.00
IUUC-Aca-004322	Anolis carolinensis	33.05	3.00e-54	206.00
IUUC-Aly-006521	Arabidopsis lyrata	81.94	0.00e+00	2043.00
IUUC-Ath-007059	Arabidopsis thaliana	80.99	0.00e+00	2033.00
IUUC-Ago-007801	Ashbya gossypii	56.12	0.00e+00	939.00
IUUC-Acl-008312	Aspergillus clavatus	66.91	0.00e+00	1141.00
IUUC-Afl-008429	Aspergillus flavus	65.43	0.00e+00	1142.00
IUUC-Afu-009092	Aspergillus fumigatus	67.03	0.00e+00	1142.00
IUUC-Ani-009317	Aspergillus nidulans	66.34	0.00e+00	1142.00
IUUC-Ang-009783	Aspergillus niger	65.55	0.00e+00	1143.00
IUUC-Aor-010178	Aspergillus oryzae	65.43	0.00e+00	1142.00
IUUC-Ate-010294	Aspergillus terreus	66.79	0.00e+00	1145.00
IUUC-Ame-010774	Astyanax mexicanus	51.14	4.00e-125	441.00
IUUC-Bgr-012293	Blumeria graminis	64.79	0.00e+00	1137.00
IUUC-Bta-012382	Bos taurus	68.36	0.00e+00	1281.00
IUUC-Bci-013937	Botrytis cinerea	65.22	0.00e+00	1132.00
IUUC-Bdi-014612	Brachypodium distachyon	86.38	0.00e+00	1939.00
IUUC-Bol-015145	Brassica oleracea	78.50	0.00e+00	1903.00
IUUC-Bra-017370	Brassica rapa	77.42	0.00e+00	1872.00
IUUC-Cel-018240	Caenorhabditis elegans	56.26	0.00e+00	942.00
IUUC-Cja-019892	Callithrix jacchus	70.98	0.00e+00	1288.00
IUUC-Cfa-020700	Canis familiaris	68.36	0.00e+00	1281.00
IUUC-Cpo-021510	Cavia porcellus	62.50	0.00e+00	1285.00
IUUC-Cre-022731	Chlamydomonas reinhardtii	65.13	0.00e+00	1071.00
IUUC-Csa-023665	Chlorocebus sabaeus	62.94	0.00e+00	1291.00
IUUC-Cin-025798	Ciona intestinalis	71.11	0.00e+00	1159.00
IUUC-Csv-025901	Ciona savignyi	65.95	0.00e+00	1169.00
IUUC-Cgl-026653	Colletotrichum gloeosporioides	63.84	0.00e+00	1100.00
IUUC-Cne-027014	Cryptococcus neoformans	66.71	0.00e+00	1197.00
IUUC-Dre-028705	Danio rerio	63.59	0.00e+00	1291.00
IUUC-Dor-030369	Dipodomys ordii	70.99	0.00e+00	1237.00
IUUC-Dme-031767	Drosophila melanogaster	61.22	0.00e+00	1154.00
IUUC-Ete-032800	Echinops telfairi	34.52	2.00e-55	209.00
IUUC-Eca-033840	Equus caballus	70.98	0.00e+00	1289.00
IUUC-Eeu-035137	Erinaceus europaeus	40.00	2.40e-01	28.90
IUUC-Fca-035466	Felis catus	69.99	0.00e+00	1277.00
IUUC-Fal-037548	Ficedula albicollis	70.76	0.00e+00	1279.00
IUUC-Fox-038023	Fusarium oxysporum	62.53	0.00e+00	1101.00
IUUC-Gmo-039285	Gadus morhua	71.53	0.00e+00	1265.00
IUUC-Ggr-039810	Gaeumannomyces graminis	64.17	0.00e+00	1134.00
IUUC-Gga-040972	Gallus gallus	69.21	0.00e+00	1289.00
IUUC-Gac-042075	Gasterosteus aculeatus	62.09	0.00e+00	1292.00
IUUC-Gma-042713	Glycine max	91.94	0.00e+00	2246.00
IUUC-Ggo-045398	Gorilla gorilla	62.94	0.00e+00	1287.00
IUUC-Hsa-046152	Homo sapiens	62.94	0.00e+00	1291.00
IUUC-Hvu-047555	Hordeum vulgare	95.00	0.00e+00	927.00
IUUC-Itr-048247	Ictidomys tridecemlineatus	62.44	0.00e+00	1274.00
IUUC-Kpa-049205	Komagataella pastoris	51.13	0.00e+00	762.00
IUUC-Lch-049587	Latimeria chalumnae	59.29	0.00e+00	800.00
IUUC-Lpe-051059	Leersia perrieri	85.34	0.00e+00	1920.00
IUUC-Loc-051911	Lepisosteus oculatus	69.21	0.00e+00	1288.00
IUUC-Lma-053007	Leptosphaeria maculans	65.81	0.00e+00	1126.00
IUUC-Laf-054234	Loxodonta africana	68.36	0.00e+00	1282.00
IUUC-Mcc-054762	Macaca mulatta	62.27	0.00e+00	1281.00
IUUC-Meu-056677	Macropus eugenii	52.46	3.00e-134	472.00
IUUC-Mor-057147	Magnaporthe oryzae	65.20	0.00e+00	1130.00
IUUC-Mpo-057314	Magnaporthe poae	64.05	0.00e+00	1134.00
IUUC-Mtr-058329	Medicago truncatula	90.35	0.00e+00	2268.00
IUUC-Mla-059094	Melampsora laricipopulina	64.33	0.00e+00	632.00
IUUC-Mga-060126	Meleagris gallopavo	67.94	0.00e+00	1262.00
IUUC-Mvi-060373	Microbotryum violaceum	68.44	0.00e+00	1237.00
IUUC-Mmr-060628	Microcebus murinus	68.36	0.00e+00	1281.00
IUUC-Mdo-061858	Monodelphis domestica	63.82	0.00e+00	1289.00
IUUC-Mmu-064116	Mus musculus	69.61	0.00e+00	1291.00
IUUC-Mac-065136	Musa acuminata	88.86	0.00e+00	2028.00
IUUC-Mpu-066463	Mustela putorius furo	69.21	0.00e+00	1290.00
IUUC-Mlu-068098	Myotis lucifugus	70.98	0.00e+00	1289.00
IUUC-Nfi-068370	Neosartorya fischeri	67.03	0.00e+00	1142.00
IUUC-Ncr-068792	Neurospora crassa	64.37	0.00e+00	1108.00
IUUC-Nle-070102	Nomascus leucogenys	70.98	0.00e+00	1284.00
IUUC-Opr-070620	Ochotona princeps	60.50	0.00e+00	1179.00
IUUC-Ont-072685	Oreochromis niloticus	63.14	0.00e+00	1284.00
IUUC-Oan-073665	Ornithorhynchus anatinus	71.41	0.00e+00	1284.00
IUUC-Ocu-074154	Oryctolagus cuniculus	33.33	2.00e-56	213.00
IUUC-Oba-075075	Oryza barthii	83.71	0.00e+00	1655.00
IUUC-Obr-076183	Oryza brachyantha	86.97	0.00e+00	1771.00
IUUC-Ogl-077691	Oryza glaberrima	87.92	0.00e+00	1971.00
IUUC-Ogu-078423	Oryza glumaepatula	86.24	0.00e+00	1923.00
IUUC-Oin-080107	Oryza indica	87.94	0.00e+00	1973.00
IUUC-Olo-080269	Oryza longistaminata	87.65	0.00e+00	1876.00
IUUC-Ome-081779	Oryza meridionalis	86.33	0.00e+00	1924.00
IUUC-Oni-082366	Oryza nivara	87.94	0.00e+00	1973.00
IUUC-Opu-083958	Oryza punctata	84.35	0.00e+00	1936.00
IUUC-Oru-084182	Oryza rufipogon	87.94	0.00e+00	1972.00
IUUC-Osa-085285	Oryza sativa	87.87	0.00e+00	1976.00
IUUC-Ola-086954	Oryzias latipes	65.64	0.00e+00	1239.00
IUUC-Olu-087685	Ostreococcus lucimarinus	61.62	0.00e+00	1006.00
IUUC-Oga-088591	Otolemur garnettii	69.21	0.00e+00	1290.00
IUUC-Oar-089417	Ovis aries	69.95	0.00e+00	1279.00
IUUC-Ptr-091510	Pan troglodytes	72.59	0.00e+00	1269.00
IUUC-Pan-091886	Papio anubis	62.94	0.00e+00	1291.00
IUUC-Psi-093755	Pelodiscus sinensis	71.10	0.00e+00	863.00
IUUC-Pma-094470	Petromyzon marinus	64.20	0.00e+00	1282.00
IUUC-Pno-094963	Phaeosphaeria nodorum	66.17	0.00e+00	1122.00
IUUC-Ppa-095479	Physcomitrella patens	73.30	0.00e+00	1768.00
IUUC-Pfo-097456	Poecilia formosa	63.06	0.00e+00	1286.00
IUUC-Pab-098075	Pongo abelii	65.68	0.00e+00	1180.00
IUUC-Pop-099557	Populus trichocarpa	88.21	0.00e+00	2200.00
IUUC-Pca-100717	Procavia capensis	75.59	7.00e-140	491.00
IUUC-Ppe-101675	Prunus persica	93.01	0.00e+00	2315.00
IUUC-Pva-103029	Pteropus vampyrus	74.31	0.00e+00	982.00
IUUC-Pgr-103318	Puccinia graminis	64.00	0.00e+00	1163.00
IUUC-Ptt-103956	Puccinia triticina	64.40	0.00e+00	1165.00
IUUC-Pte-104399	Pyrenophora teres	65.81	0.00e+00	1127.00
IUUC-Pyt-104749	Pyrenophora triticirepentis	65.81	0.00e+00	1127.00
IUUC-Rno-105784	Rattus norvegicus	63.12	0.00e+00	1295.00
IUUC-Sce-106206	Saccharomyces cerevisiae	56.56	0.00e+00	929.00
IUUC-Sha-106566	Sarcophilus harrisii	63.10	0.00e+00	1279.00
IUUC-Sja-107721	Schizosaccharomyces japonicus	60.69	0.00e+00	1053.00
IUUC-Spo-108258	Schizosaccharomyces pombe	58.01	0.00e+00	1015.00
IUUC-Ssl-108640	Sclerotinia sclerotiorum	61.39	0.00e+00	985.00
IUUC-Smo-109676	Selaginella moellendorffii	21.21	9.20e-01	28.10
IUUC-Sit-109760	Setaria italica	87.05	0.00e+00	1987.00
IUUC-Sly-111807	Solanum lycopersicum	88.86	0.00e+00	2180.00
IUUC-Stu-112869	Solanum tuberosum	87.36	0.00e+00	1959.00
IUUC-Sar-112950	Sorex araneus	32.14	1.00e-42	167.00
IUUC-Sbi-114863	Sorghum bicolor	86.68	0.00e+00	1967.00
IUUC-Sre-115092	Sporisorium reilianum	70.54	0.00e+00	1207.00
IUUC-Ssc-115284	Sus scrofa	35.71	2.70e-01	28.90
IUUC-Tgu-117214	Taeniopygia guttata	67.15	0.00e+00	1145.00
IUUC-Tru-118386	Takifugu rubripes	71.38	0.00e+00	1257.00
IUUC-Tsy-119550	Tarsius syrichta	69.12	1.00e-115	409.00
IUUC-Tni-120212	Tetraodon nigroviridis	62.14	0.00e+00	1239.00
IUUC-Tca-121353	Theobroma cacao	91.01	0.00e+00	2202.00
IUUC-Tre-122245	Trichoderma reesei	33.72	1.00e-52	201.00
IUUC-Tvi-122452	Trichoderma virens	62.93	0.00e+00	1081.00
IUUC-Tae-123692	Triticum aestivum	86.55	0.00e+00	1937.00
IUUC-Tur-126770	Triticum urartu	75.09	0.00e+00	1712.00
IUUC-Tme-126956	Tuber melanosporum	69.38	0.00e+00	1172.00
IUUC-Tbe-127873	Tupaia belangeri	31.78	3.00e-48	186.00
IUUC-Ttr-128212	Tursiops truncatus	64.88	0.00e+00	1175.00
IUUC-Uma-129327	Ustilago maydis	70.30	0.00e+00	1206.00
IUUC-Vda-129858	Verticillium dahliae	64.28	0.00e+00	1076.00
IUUC-Vpa-130743	Vicugna pacos	32.46	5.00e-51	195.00
IUUC-Xtr-131800	Xenopus tropicalis	66.17	0.00e+00	1025.00
IUUC-Xma-133216	Xiphophorus maculatus	63.06	0.00e+00	1287.00
IUUC-Yli-134482	Yarrowia lipolytica	52.71	0.00e+00	880.00
IUUC-Zma-134802	Zea mays	80.29	0.00e+00	2003.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence