iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Kpa-049308

Ensembl Protein ID

CAY68594

UniProt Accession

C4QZC0; C4QZC0_KOMPG

Genbank Protein ID

CAY68594.1

Protein Name

Polyadenylation factor subunit 2

Genbank Nucleotide ID

FN392319

Gene Name

PAS_FragB_0063

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PAS_FragB_0063	CAY68594	CAY68594

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.60e-41	135.2	165	199
UBD/Beta-Prp	3.30e-53	178.9	80	262

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgv 34
           H+d +++++f  +d  +vs+sdD+t+k+W++  g 
   Q: 165  HSDAIRDVCFspNDSKFVSCSDDNTLKIWNFNNGL 199
           ***********66699**************87766 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdk 108
           + k+ i+++ ++p+++ +++gs +g  ++w+  t ++   ++ he+++ta+k+s ++++l+++ +D+tik w ++ +   ++  +h+d ++++ fsp+++k
   Q: 80   KAKHAIQAISWTPEGRRVLSGSNSGEFTLWNGMTFNFETIMQAHESAITAIKYSYNKEWLLSADQDGTIKYWQPNFNNVNIIKGAHSDAIRDVCFSPNDSK 180
           56788999*****************************9999*******************************98877777777789*************** PP
   S: 109  lvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlkt..gkllrtltgghtdsvyslsfds 190
           +vs s+d+t+++w+ ++g   + +l+gh+  v +  +hpd  l+vsGs+D+ ++lWd +t  gk++ tl g  ++ ++ + f+ 
   Q: 181  FVSCSDDNTLKIWNFNNGLQES-VLAGHHWDVKSCDWHPDLGLIVSGSKDNLLKLWDPRTspGKCIATLHG-FKHTITATRFQN 262
           *********************9.****************99*****************55449******99.999999998875 PP

Organism

Komagataella pastoris

Protein Sequence
(Fasta)

MSEEEERKVA HRRTVDHGNP MGRWHILRSL GVTKPNKKFQ HLGIVRPESS YLIDLLPPKA 60
YPRYPAVNLP GKFVHLSANK AKHAIQAISW TPEGRRVLSG SNSGEFTLWN GMTFNFETIM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCAGAAG AAGAGGAGCG TAAGGTCGCC CATAGAAGAA CGGTTGATCA TGGCAATCCC 60
ATGGGAAGAT GGCACATATT GCGATCGTTA GGAGTTACAA AGCCGAACAA AAAGTTTCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0000790--C:nuclear chromatin
GO:0006378--P:mRNA polyadenylation
GO:0098789--P:pre-mRNA cleavage required for polyadenylation

KEGG

ppa:PAS_FragB_0063

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001064	Aegilops tauschii	40.37	2.00e-82	298.00
IUUC-Aml-001363	Ailuropoda melanoleuca	40.31	3.00e-83	301.00
IUUC-Atr-003030	Amborella trichopoda	40.00	2.00e-87	314.00
IUUC-Apl-003409	Anas platyrhynchos	40.10	2.00e-81	295.00
IUUC-Aca-004694	Anolis carolinensis	40.58	2.00e-83	302.00
IUUC-Aly-006063	Arabidopsis lyrata	40.37	3.00e-84	303.00
IUUC-Ath-006583	Arabidopsis thaliana	39.59	7.00e-85	306.00
IUUC-Ago-007805	Ashbya gossypii	49.63	9.00e-119	417.00
IUUC-Acl-008075	Aspergillus clavatus	42.82	1.00e-101	361.00
IUUC-Afl-008582	Aspergillus flavus	44.95	1.00e-100	358.00
IUUC-Afu-008817	Aspergillus fumigatus	43.80	3.00e-89	320.00
IUUC-Ani-009391	Aspergillus nidulans	41.28	3.00e-91	326.00
IUUC-Ang-009750	Aspergillus niger	47.95	3.00e-89	319.00
IUUC-Aor-010085	Aspergillus oryzae	43.55	6.00e-102	362.00
IUUC-Ate-010397	Aspergillus terreus	44.04	1.00e-102	364.00
IUUC-Ame-010741	Astyanax mexicanus	46.72	3.00e-61	228.00
IUUC-Bgr-012169	Blumeria graminis	51.34	1.00e-106	378.00
IUUC-Bta-013265	Bos taurus	40.31	6.00e-83	300.00
IUUC-Bci-013762	Botrytis cinerea	49.51	7.00e-113	399.00
IUUC-Bdi-014849	Brachypodium distachyon	41.16	1.00e-87	315.00
IUUC-Bol-015325	Brassica oleracea	38.79	5.00e-84	303.00
IUUC-Bra-017064	Brassica rapa	40.11	3.00e-86	310.00
IUUC-Cel-018378	Caenorhabditis elegans	40.70	1.00e-83	301.00
IUUC-Cja-019547	Callithrix jacchus	40.31	3.00e-83	301.00
IUUC-Cfa-020031	Canis familiaris	40.31	4.00e-83	301.00
IUUC-Cpo-021554	Cavia porcellus	42.44	5.00e-82	297.00
IUUC-Cre-022830	Chlamydomonas reinhardtii	35.75	1.00e-57	214.00
IUUC-Csa-023146	Chlorocebus sabaeus	40.05	1.00e-82	300.00
IUUC-Cho-024679	Choloepus hoffmanni	41.62	1.00e-75	276.00
IUUC-Cin-025415	Ciona intestinalis	38.60	1.00e-73	269.00
IUUC-Csv-026003	Ciona savignyi	38.64	3.00e-75	273.00
IUUC-Cgl-026391	Colletotrichum gloeosporioides	52.02	6.00e-115	405.00
IUUC-Cne-026983	Cryptococcus neoformans	40.70	3.00e-87	314.00
IUUC-Cme-027147	Cyanidioschyzon merolae	39.59	2.00e-84	303.00
IUUC-Dre-028545	Danio rerio	40.05	2.00e-82	298.00
IUUC-Dno-029677	Dasypus novemcinctus	40.31	3.00e-83	301.00
IUUC-Dse-031371	Dothistroma septosporum	47.44	1.00e-94	338.00
IUUC-Dme-031663	Drosophila melanogaster	40.58	3.00e-82	297.00
IUUC-Ete-032511	Echinops telfairi	33.16	7.00e-62	230.00
IUUC-Eca-034152	Equus caballus	40.31	4.00e-83	301.00
IUUC-Eeu-034560	Erinaceus europaeus	31.31	1.00e-24	106.00
IUUC-Fca-035820	Felis catus	40.58	2.00e-83	301.00
IUUC-Fox-037958	Fusarium oxysporum	50.24	2.00e-112	397.00
IUUC-Fso-038162	Fusarium solani	51.88	7.00e-111	392.00
IUUC-Gmo-039708	Gadus morhua	38.57	2.00e-83	301.00
IUUC-Ggr-040031	Gaeumannomyces graminis	49.03	5.00e-99	352.00
IUUC-Gga-040963	Gallus gallus	40.31	5.00e-83	300.00
IUUC-Gac-041541	Gasterosteus aculeatus	39.79	8.00e-81	293.00
IUUC-Gma-044352	Glycine max	40.26	5.00e-89	320.00
IUUC-Ggo-045564	Gorilla gorilla	40.31	3.00e-83	301.00
IUUC-Hsa-045833	Homo sapiens	40.31	4.00e-83	301.00
IUUC-Hvu-047848	Hordeum vulgare	40.45	2.00e-60	224.00
IUUC-Itr-048083	Ictidomys tridecemlineatus	40.31	4.00e-83	301.00
IUUC-Lch-050525	Latimeria chalumnae	40.31	7.00e-83	300.00
IUUC-Lpe-051364	Leersia perrieri	36.15	5.00e-72	263.00
IUUC-Loc-052696	Lepisosteus oculatus	40.31	5.00e-83	301.00
IUUC-Lma-052951	Leptosphaeria maculans	50.00	7.00e-109	385.00
IUUC-Laf-053653	Loxodonta africana	40.31	8.00e-83	300.00
IUUC-Mcc-055797	Macaca mulatta	40.31	4.00e-83	301.00
IUUC-Meu-056331	Macropus eugenii	40.56	2.00e-70	258.00
IUUC-Mor-057168	Magnaporthe oryzae	50.42	6.00e-108	382.00
IUUC-Mpo-057510	Magnaporthe poae	54.29	3.00e-77	279.00
IUUC-Mtr-058032	Medicago truncatula	39.34	3.00e-88	317.00
IUUC-Mla-058852	Melampsora laricipopulina	44.30	2.00e-100	357.00
IUUC-Mga-059311	Meleagris gallopavo	40.31	5.00e-83	301.00
IUUC-Mvi-060544	Microbotryum violaceum	41.95	1.00e-92	332.00
IUUC-Mmr-061143	Microcebus murinus	40.31	4.00e-83	301.00
IUUC-Mdo-061977	Monodelphis domestica	40.31	4.00e-83	301.00
IUUC-Mmu-063922	Mus musculus	40.31	5.00e-83	300.00
IUUC-Mac-064961	Musa acuminata	41.69	3.00e-89	320.00
IUUC-Mpu-066079	Mustela putorius furo	43.85	9.00e-79	286.00
IUUC-Mlu-067247	Myotis lucifugus	40.31	2.00e-83	302.00
IUUC-Nfi-068255	Neosartorya fischeri	45.50	3.00e-97	346.00
IUUC-Ncr-068909	Neurospora crassa	51.72	2.00e-113	401.00
IUUC-Nle-068994	Nomascus leucogenys	40.31	4.00e-83	301.00
IUUC-Opr-071079	Ochotona princeps	40.31	4.00e-83	301.00
IUUC-Ont-071971	Oreochromis niloticus	40.31	2.00e-82	298.00
IUUC-Oan-073135	Ornithorhynchus anatinus	42.73	2.00e-82	298.00
IUUC-Ocu-073982	Oryctolagus cuniculus	40.31	4.00e-83	301.00
IUUC-Oba-075297	Oryza barthii	36.41	2.00e-74	271.00
IUUC-Obr-076641	Oryza brachyantha	40.37	8.00e-87	312.00
IUUC-Ogl-077539	Oryza glaberrima	40.82	2.00e-60	224.00
IUUC-Ogu-078807	Oryza glumaepatula	36.41	2.00e-74	271.00
IUUC-Oin-079229	Oryza indica	40.11	5.00e-87	313.00
IUUC-Olo-080371	Oryza longistaminata	36.41	1.00e-74	271.00
IUUC-Ome-081149	Oryza meridionalis	36.15	1.00e-73	268.00
IUUC-Oni-082970	Oryza nivara	36.41	2.00e-74	271.00
IUUC-Opu-083415	Oryza punctata	36.68	3.00e-72	263.00
IUUC-Oru-085236	Oryza rufipogon	36.41	3.00e-74	271.00
IUUC-Ola-087421	Oryzias latipes	39.07	4.00e-84	303.00
IUUC-Olu-087821	Ostreococcus lucimarinus	39.05	7.00e-82	295.00
IUUC-Oga-088132	Otolemur garnettii	40.31	3.00e-83	301.00
IUUC-Oar-089513	Ovis aries	40.31	6.00e-83	300.00
IUUC-Ptr-090717	Pan troglodytes	40.31	4.00e-83	301.00
IUUC-Pan-092108	Papio anubis	40.31	4.00e-83	301.00
IUUC-Psi-093892	Pelodiscus sinensis	40.31	7.00e-83	300.00
IUUC-Pma-094561	Petromyzon marinus	39.53	2.00e-81	295.00
IUUC-Pno-094943	Phaeosphaeria nodorum	49.73	9.00e-108	381.00
IUUC-Ppa-095359	Physcomitrella patens	42.48	2.00e-93	334.00
IUUC-Pfo-096516	Poecilia formosa	40.21	2.00e-80	291.00
IUUC-Pab-097759	Pongo abelii	40.31	3.00e-83	301.00
IUUC-Pop-099553	Populus trichocarpa	40.90	2.00e-86	311.00
IUUC-Ppe-101957	Prunus persica	39.74	2.00e-88	317.00
IUUC-Pva-102918	Pteropus vampyrus	40.31	4.00e-83	301.00
IUUC-Pgr-103594	Puccinia graminis	45.89	7.00e-99	352.00
IUUC-Ptt-103879	Puccinia triticina	42.18	4.00e-86	310.00
IUUC-Pte-104419	Pyrenophora teres	49.46	3.00e-108	383.00
IUUC-Pyt-104718	Pyrenophora triticirepentis	49.73	3.00e-108	383.00
IUUC-Rno-105838	Rattus norvegicus	40.31	5.00e-83	300.00
IUUC-Sce-106331	Saccharomyces cerevisiae	48.67	2.00e-116	410.00
IUUC-Sha-107435	Sarcophilus harrisii	40.41	2.00e-82	299.00
IUUC-Sja-107796	Schizosaccharomyces japonicus	44.66	5.00e-103	365.00
IUUC-Spo-108163	Schizosaccharomyces pombe	46.19	3.00e-106	376.00
IUUC-Smo-108972	Selaginella moellendorffii	43.01	3.00e-95	339.00
IUUC-Sit-109729	Setaria italica	39.58	1.00e-84	305.00
IUUC-Sly-111679	Solanum lycopersicum	40.78	9.00e-89	319.00
IUUC-Sar-113157	Sorex araneus	40.31	5.00e-83	301.00
IUUC-Sbi-114853	Sorghum bicolor	39.84	9.00e-85	305.00
IUUC-Sre-115085	Sporisorium reilianum	39.62	7.00e-84	302.00
IUUC-Ssc-116286	Sus scrofa	40.21	1.00e-81	296.00
IUUC-Tgu-117219	Taeniopygia guttata	40.31	8.00e-83	300.00
IUUC-Tru-117550	Takifugu rubripes	41.10	2.00e-84	303.00
IUUC-Tsy-119294	Tarsius syrichta	40.31	3.00e-83	301.00
IUUC-Tni-120561	Tetraodon nigroviridis	40.84	1.00e-83	302.00
IUUC-Tca-121347	Theobroma cacao	39.75	5.00e-89	320.00
IUUC-Tre-122018	Trichoderma reesei	51.08	4.00e-111	392.00
IUUC-Tvi-122413	Trichoderma virens	50.81	1.00e-110	391.00
IUUC-Tae-123904	Triticum aestivum	41.42	3.00e-88	317.00
IUUC-Tme-127077	Tuber melanosporum	54.09	2.00e-120	424.00
IUUC-Tbe-127744	Tupaia belangeri	43.37	1.00e-43	170.00
IUUC-Ttr-128777	Tursiops truncatus	35.09	5.00e-62	231.00
IUUC-Uma-129568	Ustilago maydis	40.49	4.00e-79	286.00
IUUC-Vda-129834	Verticillium dahliae	48.79	3.00e-111	393.00
IUUC-Vvi-131360	Vitis vinifera	40.78	1.00e-88	318.00
IUUC-Xtr-132630	Xenopus tropicalis	40.05	3.00e-81	295.00
IUUC-Xma-133665	Xiphophorus maculatus	40.58	2.00e-82	298.00
IUUC-Yli-134556	Yarrowia lipolytica	47.25	9.00e-114	401.00
IUUC-Zma-135787	Zea mays	39.58	4.00e-85	306.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence