iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099553

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000339

Gene Name

POPTRDRAFT_415574; POPTR_0003s19750g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0003s19750	POPTR_0003s19750.1	POPTR_0003s19750.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.80e-32	110.5	258	294
UBD/Beta-Prp	3.20e-58	198.4	295	456

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           H++sv++l+f  +d  ++s+sdD t+kvWD+ +++ +
   Q: 258  HKESVRDLSFcrTDLKFCSCSDDTTVKVWDFARCHEE 294
           9**********877889*************8777665 PP

UBD/Beta-Prp

   S: 46   rslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsgh 136
           rsl gh   v++v+++p++++lv+g++D+++k+wd ++g  + +++gh+++vl+++++++g++++++s+d++i+++dl+  ++le  ++gh
   Q: 295  RSLTGHGWDVKSVDWHPSKSLLVSGGKDNLVKLWDAKSGRELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDLRAMKELE-SFRGH 384
           78999999****************************************************************************9.***** PP
   S: 137  dgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklw 207
           ++ v+ +++hp+   ++vsGs+D+ +  W +  ++   + +++h++sv  ls+++ g  l sgs+d t k+w
   Q: 385  RKDVTALAWHPFHeEYFVSGSYDGSIFHWLVGHETPQVEVSSAHDNSVWDLSWHPIGYLLCSGSNDHTTKFW 456
           ****************************************99****************************** PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MNYGDPQQQQ PQHQHQQPLQ QHQHQQPQHQ HQQPQHHHHQ HMQQQPPPGG DFHRGQPPPM 60
MRQPSASSTT LNPLDYHHHP QAAPGPPPPK YEANHGDGYG GKRMRKLTQR RAVDYTSTVV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAATTACG GTGATCCTCA ACAACAGCAG CCACAGCACC AGCACCAGCA GCCACTACAA 60
CAACACCAGC ACCAGCAGCC ACAGCACCAG CACCAGCAGC CACAACACCA CCACCACCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0006379--P:mRNA cleavage

KEGG

pop:POPTR_0003s19750g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001064	Aegilops tauschii	71.19	0.00e+00	692.00
IUUC-Aly-006063	Arabidopsis lyrata	74.44	0.00e+00	733.00
IUUC-Ath-006583	Arabidopsis thaliana	73.02	0.00e+00	738.00
IUUC-Ago-007805	Ashbya gossypii	41.04	2.00e-87	315.00
IUUC-Acl-008075	Aspergillus clavatus	40.10	3.00e-93	335.00
IUUC-Afl-008582	Aspergillus flavus	41.96	3.00e-90	325.00
IUUC-Afu-008817	Aspergillus fumigatus	39.06	8.00e-81	293.00
IUUC-Ani-009391	Aspergillus nidulans	38.00	3.00e-82	298.00
IUUC-Ang-009750	Aspergillus niger	43.65	2.00e-75	275.00
IUUC-Aor-010085	Aspergillus oryzae	40.59	5.00e-93	334.00
IUUC-Ate-010397	Aspergillus terreus	40.10	8.00e-93	333.00
IUUC-Bgr-012169	Blumeria graminis	46.99	5.00e-100	357.00
IUUC-Bci-013762	Botrytis cinerea	43.84	7.00e-100	357.00
IUUC-Bdi-014849	Brachypodium distachyon	73.49	0.00e+00	746.00
IUUC-Bol-015325	Brassica oleracea	75.11	0.00e+00	736.00
IUUC-Bra-017187	Brassica rapa	76.16	0.00e+00	746.00
IUUC-Cre-022830	Chlamydomonas reinhardtii	41.95	8.00e-76	277.00
IUUC-Cgl-026391	Colletotrichum gloeosporioides	46.07	1.00e-97	350.00
IUUC-Cne-026983	Cryptococcus neoformans	41.55	2.00e-94	339.00
IUUC-Cme-027147	Cyanidioschyzon merolae	49.74	2.00e-112	399.00
IUUC-Eeu-034560	Erinaceus europaeus	43.22	5.00e-46	179.00
IUUC-Fox-037958	Fusarium oxysporum	46.22	6.00e-96	344.00
IUUC-Fso-038162	Fusarium solani	45.94	2.00e-95	342.00
IUUC-Ggr-040031	Gaeumannomyces graminis	41.50	6.00e-88	317.00
IUUC-Gma-043757	Glycine max	84.12	0.00e+00	827.00
IUUC-Hvu-047848	Hordeum vulgare	78.90	2.00e-157	548.00
IUUC-Kpa-049308	Komagataella pastoris	40.90	7.00e-86	310.00
IUUC-Lpe-051364	Leersia perrieri	72.98	0.00e+00	727.00
IUUC-Lma-052951	Leptosphaeria maculans	46.20	5.00e-98	351.00
IUUC-Meu-056331	Macropus eugenii	53.89	1.00e-104	374.00
IUUC-Mor-057168	Magnaporthe oryzae	40.46	1.00e-90	326.00
IUUC-Mpo-057510	Magnaporthe poae	44.79	1.00e-62	233.00
IUUC-Mla-058852	Melampsora laricipopulina	49.24	2.00e-112	399.00
IUUC-Mvi-060544	Microbotryum violaceum	52.37	1.00e-118	419.00
IUUC-Mac-064961	Musa acuminata	83.52	0.00e+00	810.00
IUUC-Nfi-068255	Neosartorya fischeri	41.37	1.00e-88	320.00
IUUC-Ncr-068909	Neurospora crassa	44.05	5.00e-99	354.00
IUUC-Oba-075297	Oryza barthii	73.86	0.00e+00	743.00
IUUC-Obr-076641	Oryza brachyantha	81.80	0.00e+00	765.00
IUUC-Ogl-077539	Oryza glaberrima	82.26	4.00e-170	590.00
IUUC-Ogu-078807	Oryza glumaepatula	73.86	0.00e+00	743.00
IUUC-Oin-079229	Oryza indica	78.01	0.00e+00	794.00
IUUC-Olo-080371	Oryza longistaminata	77.65	0.00e+00	719.00
IUUC-Ome-081149	Oryza meridionalis	73.67	0.00e+00	752.00
IUUC-Oni-082970	Oryza nivara	74.07	0.00e+00	744.00
IUUC-Opu-083415	Oryza punctata	73.49	0.00e+00	728.00
IUUC-Oru-085236	Oryza rufipogon	74.07	0.00e+00	744.00
IUUC-Olu-087821	Ostreococcus lucimarinus	54.67	5.00e-121	426.00
IUUC-Ppe-101957	Prunus persica	85.22	0.00e+00	831.00
IUUC-Pgr-103594	Puccinia graminis	50.79	6.00e-115	407.00
IUUC-Sce-106331	Saccharomyces cerevisiae	40.19	4.00e-82	298.00
IUUC-Sja-107796	Schizosaccharomyces japonicus	43.42	1.00e-97	350.00
IUUC-Spo-108163	Schizosaccharomyces pombe	44.17	1.00e-101	363.00
IUUC-Smo-109602	Selaginella moellendorffii	71.56	0.00e+00	657.00
IUUC-Sly-111679	Solanum lycopersicum	82.04	0.00e+00	787.00
IUUC-Sbi-114853	Sorghum bicolor	76.80	0.00e+00	781.00
IUUC-Tca-121347	Theobroma cacao	87.00	0.00e+00	858.00
IUUC-Tre-122018	Trichoderma reesei	42.64	5.00e-98	351.00
IUUC-Tvi-122413	Trichoderma virens	42.64	7.00e-97	347.00
IUUC-Tae-123904	Triticum aestivum	73.59	0.00e+00	739.00
IUUC-Tme-127077	Tuber melanosporum	48.94	3.00e-106	378.00
IUUC-Tbe-127744	Tupaia belangeri	38.66	3.00e-71	263.00
IUUC-Uma-129568	Ustilago maydis	43.73	3.00e-95	342.00
IUUC-Vda-129834	Verticillium dahliae	41.42	2.00e-91	328.00
IUUC-Vvi-131360	Vitis vinifera	83.66	0.00e+00	875.00
IUUC-Yli-134556	Yarrowia lipolytica	40.00	6.00e-83	300.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence