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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Spo-108046
UUCD1 version UUC-ScP-00107
Ensembl Protein ID SPBC1A4.07c.1:pep
UniProt Accession O74340; DCA13_SCHPO
Genbank Protein ID CAA20111.1
Protein Name Protein sof1; U3 small nucleolar RNA-associated protein sof1
Genbank Nucleotide ID CU329671
Gene Name sof1; SPBC1A4.07c
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
SPBC1A4.07c SPBC1A4.07c.1 SPBC1A4.07c.1:pep
Annotation
mRNA Expression
GEO
Protein-protein Interaction
iRefIndexMentha
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 5.80e-33 109.7 272 306
UBD/Beta-Prp 1.10e-41 141.0 192 347
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgv 34
           H + v +++f ++   +vsGs+D+ti+++++r+g+
   Q: 272  HVSAVMSVDFsPTgQEFVSGSYDKTIRIYNVREGH 306
           999********77799***************9987 PP
   

   UBD/Beta-Prp
   S: 15   cvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk.ilvtgseDrtikvwdlstgk.cvhtlkghedsvlslsfs 103
           +vkf   ++s+la++++d++i ++d++t + l +l  +   +++++++p +   +v gseD++++ +d+++ k  +h++k h + v+s++fs
   Q: 192  VVKFnYTETSVLASAGMDRSIVIYDLRTSSPLTKLITKL-RTNSISWNPMEAfNFVAGSEDHNLYMYDMRNLKrALHVYKDHVSAVMSVDFS 282
           566767888999999999999999999988888886665.6888888888776789999999999999886542788889999999999999 PP
   S: 104  psgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlkt 168
           p+g+ +vsGs d+tir++++++g       +++++ v+ v+++ d+++++sGs+D+ vrlW+ + 
   Q: 283  PTGQEFVSGSYDKTIRIYNVREGHSRDVYHTKRMQRVTAVKFSMDAQYIFSGSDDSNVRLWRARA 347
           99999999999999999999999888878899999999999999999999999999999998744 PP
   
Organism Schizosaccharomyces pombe
Functional Description
(View)

Functional Description


     Required for ribosomal RNA processing.
 Required for ribosomal RNA processing.
Protein Sequence
(Fasta)
MKVKTITRGT SLTRLNDQDP VKRNLDPSLH PFERAREYTR ALNATKMDRM FAAPFLGQLG 60
RGHQDGVYSL ARDTKTLIDC ASGSGDGAVK LWDASERCER WTSKAHEGIV RGLVFSNQGD 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Spo-108046|E3,WD_repeat;UBD,Beta-Prp|Schizosaccharomyces pombe
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TGAAGTATTT GCCCTTTTGT TTATTCAAAT ACGATGGTTT ACGCTACACC TCATTATCCA 60
ATATTTTTGC AAGGTGTAGA GCTTACTACT AGAAATTGAA ACTTGCAACG AACCAAAAAG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Spo-108046|E3,WD_repeat;UBD,Beta-Prp|Schizosaccharomyces pombe
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR011047--Quinoprotein_ADH-like_supfam
IPR007287--Sof1
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04158--Sof1
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005737--C:cytoplasm
GO:0072686--C:mitotic spindle
GO:0005730--C:nucleolus
GO:0005634--C:nucleus
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364--P:rRNA processing
KEGG spo:SPBC1A4.07c
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002178 Ailuropoda melanoleuca 44.87 1.00e-107 381.00
IUUC-Atr-002799 Amborella trichopoda 46.33 6.00e-114 402.00
IUUC-Apl-003675 Anas platyrhynchos 46.40 3.00e-110 389.00
IUUC-Aca-004792 Anolis carolinensis 45.27 2.00e-112 396.00
IUUC-Aly-005998 Arabidopsis lyrata 44.99 2.00e-110 390.00
IUUC-Ath-007526 Arabidopsis thaliana 44.77 7.00e-109 385.00
IUUC-Ago-007774 Ashbya gossypii 50.00 2.00e-137 480.00
IUUC-Acl-008024 Aspergillus clavatus 52.47 3.00e-141 493.00
IUUC-Afu-008930 Aspergillus fumigatus 50.98 2.00e-136 477.00
IUUC-Ani-009370 Aspergillus nidulans 52.11 7.00e-141 491.00
IUUC-Ang-009827 Aspergillus niger 52.13 4.00e-140 489.00
IUUC-Aor-010060 Aspergillus oryzae 52.48 4.00e-135 472.00
IUUC-Ate-010434 Aspergillus terreus 52.07 4.00e-114 402.00
IUUC-Ame-011967 Astyanax mexicanus 48.10 2.00e-117 413.00
IUUC-Bgr-011989 Blumeria graminis 50.56 2.00e-135 473.00
IUUC-Bta-013291 Bos taurus 35.08 2.00e-68 251.00
IUUC-Bci-013868 Botrytis cinerea 49.66 8.00e-133 464.00
IUUC-Bdi-014343 Brachypodium distachyon 46.10 3.00e-108 383.00
IUUC-Bol-015740 Brassica oleracea 43.43 2.00e-103 367.00
IUUC-Bra-016689 Brassica rapa 43.21 3.00e-103 366.00
IUUC-Cel-018536 Caenorhabditis elegans 38.21 5.00e-82 296.00
IUUC-Cja-018779 Callithrix jacchus 45.54 9.00e-112 394.00
IUUC-Cfa-020105 Canis familiaris 45.54 3.00e-111 393.00
IUUC-Cpo-021538 Cavia porcellus 46.21 2.00e-110 390.00
IUUC-Cre-022798 Chlamydomonas reinhardtii 53.12 2.00e-47 179.00
IUUC-Csa-023492 Chlorocebus sabaeus 45.76 2.00e-112 397.00
IUUC-Cho-024497 Choloepus hoffmanni 39.46 1.00e-64 238.00
IUUC-Cin-025524 Ciona intestinalis 45.82 2.00e-106 377.00
IUUC-Csv-026197 Ciona savignyi 44.30 1.00e-106 377.00
IUUC-Cgl-026745 Colletotrichum gloeosporioides 49.78 4.00e-125 439.00
IUUC-Cne-026840 Cryptococcus neoformans 36.33 2.00e-78 285.00
IUUC-Cme-027111 Cyanidioschyzon merolae 35.66 9.00e-74 268.00
IUUC-Dre-027471 Danio rerio 46.67 5.00e-113 399.00
IUUC-Dno-029790 Dasypus novemcinctus 48.83 9.00e-94 334.00
IUUC-Dor-030971 Dipodomys ordii 35.94 6.00e-74 269.00
IUUC-Dse-031563 Dothistroma septosporum 51.68 2.00e-133 466.00
IUUC-Dme-032161 Drosophila melanogaster 43.92 8.00e-110 388.00
IUUC-Ete-033127 Echinops telfairi 43.33 4.00e-100 356.00
IUUC-Eca-033531 Equus caballus 46.24 4.00e-110 389.00
IUUC-Eeu-034663 Erinaceus europaeus 39.20 6.00e-89 319.00
IUUC-Fca-036258 Felis catus 45.54 3.00e-111 393.00
IUUC-Fal-037456 Ficedula albicollis 45.98 4.00e-110 389.00
IUUC-Fox-038025 Fusarium oxysporum 51.91 2.00e-135 473.00
IUUC-Fso-038344 Fusarium solani 52.58 6.00e-124 435.00
IUUC-Gmo-039643 Gadus morhua 45.31 4.00e-112 395.00
IUUC-Ggr-039816 Gaeumannomyces graminis 49.16 3.00e-122 429.00
IUUC-Gga-040143 Gallus gallus 45.29 5.00e-110 389.00
IUUC-Gac-041665 Gasterosteus aculeatus 46.54 6.00e-114 402.00
IUUC-Gma-043073 Glycine max 45.66 1.00e-109 388.00
IUUC-Ggo-045058 Gorilla gorilla 45.98 3.00e-112 397.00
IUUC-Hsa-046843 Homo sapiens 45.76 2.00e-111 394.00
IUUC-Hvu-047654 Hordeum vulgare 49.42 4.00e-70 255.00
IUUC-Itr-048822 Ictidomys tridecemlineatus 45.98 3.00e-112 396.00
IUUC-Kpa-049232 Komagataella pastoris 53.96 1.00e-147 514.00
IUUC-Lch-050542 Latimeria chalumnae 46.82 2.00e-116 410.00
IUUC-Lpe-051622 Leersia perrieri 46.33 7.00e-110 388.00
IUUC-Loc-052674 Lepisosteus oculatus 45.95 2.00e-114 404.00
IUUC-Lma-053108 Leptosphaeria maculans 49.89 1.00e-134 471.00
IUUC-Laf-053385 Loxodonta africana 47.32 3.00e-112 396.00
IUUC-Mcc-055151 Macaca mulatta 45.54 8.00e-112 395.00
IUUC-Meu-056230 Macropus eugenii 43.13 6.00e-45 172.00
IUUC-Mor-057013 Magnaporthe oryzae 48.58 1.00e-120 424.00
IUUC-Mpo-057530 Magnaporthe poae 49.40 6.00e-123 432.00
IUUC-Mtr-058187 Medicago truncatula 45.21 5.00e-109 385.00
IUUC-Mla-058964 Melampsora laricipopulina 37.42 5.00e-90 322.00
IUUC-Mga-059712 Meleagris gallopavo 46.21 3.00e-109 386.00
IUUC-Mvi-060370 Microbotryum violaceum 37.11 9.00e-89 318.00
IUUC-Mmr-061340 Microcebus murinus 44.35 5.00e-106 376.00
IUUC-Mdo-062978 Monodelphis domestica 45.54 1.00e-114 404.00
IUUC-Mmu-063439 Mus musculus 46.65 1.00e-114 404.00
IUUC-Mac-065129 Musa acuminata 45.88 1.00e-114 404.00
IUUC-Mpu-066548 Mustela putorius furo 43.99 5.00e-86 309.00
IUUC-Mlu-067660 Myotis lucifugus 45.54 9.00e-112 394.00
IUUC-Nfi-068455 Neosartorya fischeri 52.49 8.00e-140 488.00
IUUC-Ncr-068848 Neurospora crassa 48.42 1.00e-123 434.00
IUUC-Nle-069923 Nomascus leucogenys 45.98 5.00e-112 395.00
IUUC-Opr-070279 Ochotona princeps 41.21 5.00e-32 130.00
IUUC-Ont-072234 Oreochromis niloticus 47.10 5.00e-118 415.00
IUUC-Oan-073713 Ornithorhynchus anatinus 41.45 3.00e-36 142.00
IUUC-Ocu-073782 Oryctolagus cuniculus 46.43 6.00e-114 402.00
IUUC-Oba-075161 Oryza barthii 46.33 3.00e-110 389.00
IUUC-Obr-076868 Oryza brachyantha 46.55 1.00e-110 390.00
IUUC-Ogl-077062 Oryza glaberrima 46.33 3.00e-110 389.00
IUUC-Ogu-078308 Oryza glumaepatula 46.33 3.00e-110 389.00
IUUC-Oin-079378 Oryza indica 46.33 3.00e-110 389.00
IUUC-Olo-080638 Oryza longistaminata 43.88 2.00e-99 353.00
IUUC-Oni-082368 Oryza nivara 46.33 3.00e-110 389.00
IUUC-Opu-083628 Oryza punctata 46.33 3.00e-110 389.00
IUUC-Oru-085226 Oryza rufipogon 46.33 7.00e-110 388.00
IUUC-Osa-085368 Oryza sativa 43.59 1.00e-51 194.00
IUUC-Ola-086836 Oryzias latipes 47.77 2.00e-119 420.00
IUUC-Olu-087755 Ostreococcus lucimarinus 43.84 9.00e-107 378.00
IUUC-Oga-088170 Otolemur garnettii 45.76 5.00e-112 395.00
IUUC-Oar-089388 Ovis aries 45.76 2.00e-111 394.00
IUUC-Ptr-090494 Pan troglodytes 45.76 1.00e-111 395.00
IUUC-Pan-091697 Papio anubis 45.76 3.00e-112 397.00
IUUC-Psi-093916 Pelodiscus sinensis 44.07 1.00e-106 377.00
IUUC-Pno-095004 Phaeosphaeria nodorum 48.98 3.00e-127 446.00
IUUC-Ppa-095514 Physcomitrella patens 45.66 2.00e-116 410.00
IUUC-Pfo-097432 Poecilia formosa 47.00 1.00e-111 394.00
IUUC-Pab-098423 Pongo abelii 46.21 1.00e-112 397.00
IUUC-Pop-099649 Populus trichocarpa 46.77 1.00e-117 414.00
IUUC-Pca-100365 Procavia capensis 45.31 2.00e-107 380.00
IUUC-Ppe-101350 Prunus persica 44.57 5.00e-111 392.00
IUUC-Pva-102845 Pteropus vampyrus 45.64 7.00e-111 392.00
IUUC-Pgr-103469 Puccinia graminis 34.10 3.00e-75 273.00
IUUC-Ptt-103980 Puccinia triticina 35.73 2.00e-63 234.00
IUUC-Pte-104111 Pyrenophora teres 51.69 5.00e-128 449.00
IUUC-Pyt-104610 Pyrenophora triticirepentis 51.47 2.00e-127 447.00
IUUC-Rno-105082 Rattus norvegicus 46.43 2.00e-113 400.00
IUUC-Sce-106340 Saccharomyces cerevisiae 50.96 4.00e-139 486.00
IUUC-Sha-106584 Sarcophilus harrisii 45.09 2.00e-113 400.00
IUUC-Sja-107703 Schizosaccharomyces japonicus 78.44 0.00e+00 682.00
IUUC-Ssl-108574 Sclerotinia sclerotiorum 50.45 3.00e-133 466.00
IUUC-Smo-109548 Selaginella moellendorffii 46.77 5.00e-118 415.00
IUUC-Sit-110242 Setaria italica 45.88 4.00e-109 385.00
IUUC-Sly-111762 Solanum lycopersicum 45.43 3.00e-107 379.00
IUUC-Stu-112156 Solanum tuberosum 45.66 2.00e-108 383.00
IUUC-Sbi-114104 Sorghum bicolor 45.43 1.00e-109 387.00
IUUC-Sre-114951 Sporisorium reilianum 41.02 3.00e-106 376.00
IUUC-Ssc-115510 Sus scrofa 45.31 2.00e-110 390.00
IUUC-Tgu-117234 Taeniopygia guttata 47.17 2.00e-110 390.00
IUUC-Tru-117986 Takifugu rubripes 46.26 1.00e-114 404.00
IUUC-Tsy-119252 Tarsius syrichta 45.58 3.00e-102 363.00
IUUC-Tni-119785 Tetraodon nigroviridis 46.17 1.00e-108 384.00
IUUC-Tca-121222 Theobroma cacao 46.33 2.00e-114 403.00
IUUC-Tre-122243 Trichoderma reesei 52.36 1.00e-132 464.00
IUUC-Tvi-122293 Trichoderma virens 53.03 2.00e-134 470.00
IUUC-Tae-125191 Triticum aestivum 45.21 1.00e-101 361.00
IUUC-Tur-126098 Triticum urartu 44.11 2.00e-94 337.00
IUUC-Tme-127200 Tuber melanosporum 58.78 3.00e-153 533.00
IUUC-Tbe-127568 Tupaia belangeri 44.93 1.00e-51 194.00
IUUC-Ttr-129185 Tursiops truncatus 39.51 5.00e-88 316.00
IUUC-Uma-129353 Ustilago maydis 42.04 1.00e-107 381.00
IUUC-Vda-129768 Verticillium dahliae 51.79 8.00e-131 458.00
IUUC-Vpa-130572 Vicugna pacos 45.31 3.00e-110 390.00
IUUC-Vvi-131555 Vitis vinifera 45.88 9.00e-113 398.00
IUUC-Xtr-132263 Xenopus tropicalis 47.67 8.00e-96 341.00
IUUC-Xma-133925 Xiphophorus maculatus 47.47 1.00e-111 394.00
IUUC-Yli-134384 Yarrowia lipolytica 52.38 8.00e-138 481.00
IUUC-Zma-135616 Zea mays 45.80 3.00e-107 380.00
Created Date 25-Jun-2017

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