iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cme-027260

Ensembl Protein ID

CMK054CT

UniProt Accession

M1VHP3; M1VHP3_CYAM1

Genbank Protein ID

BAM80448.1

Protein Name

Nucleotide excision repair protein yeast rad23/ human HHR23A homolog

Genbank Nucleotide ID

AP006493

Gene Name

CYME_CMK054C

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CMK054C	CMK054CT	CMK054CT

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	9.80e-16	55.4	179	211
ULD/UDP/UBQ/UBQ_Other	1.50e-10	38.8	1	77

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 8    eqlveMGFdreealqaLraannnleaAveyLld 40
           + +++MGFd+  + +a+raa++n+e+A+eyL +
   Q: 179  NRMRDMGFDDGSIERAMRAAHYNPERAIEYLCN 211
           789****************************76 PP

ULD/UDP/UBQ/UBQ_Other

   S: 1    vqvtvksldgseltlk.vnpsdtVaeLKeki....ekklgip.peqqrLiykGkiL.eddktLadyglkdgstihll 70
           + +t+k+ld+++l+l  ++p++tV eLK+++    e ++     ++ rLi++G++L ++ ++Lad+g++d++ ++++
   Q: 1    MRLTFKTLDNKNLSLDgISPDTTVEELKRELggreEFRWDPArTQEARLIFAGRVLsDPTQKLADCGMQDDDFLVVM 77
           679****************************997555588887789*************************999887 PP

Organism

Cyanidioschyzon merolae

Protein Sequence
(Fasta)

MRLTFKTLDN KNLSLDGISP DTTVEELKRE LGGREEFRWD PARTQEARLI FAGRVLSDPT 60
QKLADCGMQD DDFLVVMPPR VATQRSRKTA SVSSADAQLK TPLQAGLASE ATDSATIASE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCGTCTCA CTTTCAAAAC TCTTGATAAC AAAAACCTTT CCCTGGATGG AATCAGCCCG 60
GATACGACGG TCGAAGAGCT GAAGCGTGAA CTTGGAGGCA GGGAGGAGTT TCGCTGGGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

cme:CYME_CMK054C

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000770	Aegilops tauschii	28.90	4.00e-21	93.20
IUUC-Aml-001195	Ailuropoda melanoleuca	35.71	2.00e-06	44.30
IUUC-Atr-003116	Amborella trichopoda	28.04	6.00e-19	85.90
IUUC-Apl-003371	Anas platyrhynchos	29.84	3.00e-16	77.00
IUUC-Aca-004704	Anolis carolinensis	27.94	4.00e-11	59.70
IUUC-Aly-006159	Arabidopsis lyrata	27.45	3.00e-28	117.00
IUUC-Ath-006674	Arabidopsis thaliana	28.24	2.00e-29	120.00
IUUC-Ago-007830	Ashbya gossypii	26.05	2.00e-11	60.80
IUUC-Acl-008212	Aspergillus clavatus	51.02	7.00e-09	52.80
IUUC-Afl-008605	Aspergillus flavus	50.00	3.00e-09	54.30
IUUC-Afu-008877	Aspergillus fumigatus	50.00	7.00e-10	55.80
IUUC-Ani-009460	Aspergillus nidulans	50.94	7.00e-11	58.90
IUUC-Aor-010032	Aspergillus oryzae	27.52	3.00e-09	53.90
IUUC-Ate-010458	Aspergillus terreus	29.09	3.00e-19	86.70
IUUC-Ame-011342	Astyanax mexicanus	26.29	4.00e-15	73.20
IUUC-Bgr-012056	Blumeria graminis	28.04	4.00e-13	66.60
IUUC-Bta-012377	Bos taurus	28.17	1.00e-16	78.20
IUUC-Bci-013933	Botrytis cinerea	29.44	1.00e-15	75.10
IUUC-Bdi-014718	Brachypodium distachyon	31.47	2.00e-16	77.40
IUUC-Bol-015272	Brassica oleracea	28.78	3.00e-29	119.00
IUUC-Bra-016970	Brassica rapa	29.09	1.00e-30	124.00
IUUC-Cel-018364	Caenorhabditis elegans	31.82	2.00e-11	60.80
IUUC-Cja-018946	Callithrix jacchus	29.72	3.00e-17	80.50
IUUC-Cpo-022145	Cavia porcellus	29.84	1.00e-14	72.00
IUUC-Cre-022810	Chlamydomonas reinhardtii	29.69	2.00e-14	71.20
IUUC-Csa-023714	Chlorocebus sabaeus	26.14	4.00e-16	76.60
IUUC-Cho-024814	Choloepus hoffmanni	26.02	5.00e-06	43.10
IUUC-Cin-025741	Ciona intestinalis	24.69	4.00e-13	66.20
IUUC-Csv-025823	Ciona savignyi	24.81	3.00e-13	66.20
IUUC-Dre-028209	Danio rerio	27.49	2.00e-25	107.00
IUUC-Dno-030017	Dasypus novemcinctus	25.27	1.00e-14	71.60
IUUC-Dor-030358	Dipodomys ordii	28.97	1.00e-16	78.60
IUUC-Dse-031336	Dothistroma septosporum	46.55	1.00e-10	58.20
IUUC-Dme-032027	Drosophila melanogaster	24.65	4.00e-26	110.00
IUUC-Ete-032583	Echinops telfairi	26.05	1.00e-05	42.00
IUUC-Eca-034243	Equus caballus	27.35	1.00e-12	65.10
IUUC-Eeu-034721	Erinaceus europaeus	34.16	1.00e-09	54.70
IUUC-Fca-035679	Felis catus	27.57	1.00e-11	61.60
IUUC-Fal-037148	Ficedula albicollis	28.86	3.00e-14	70.50
IUUC-Fox-037960	Fusarium oxysporum	27.06	1.00e-12	65.10
IUUC-Fso-038107	Fusarium solani	29.63	2.00e-14	71.20
IUUC-Gmo-039080	Gadus morhua	29.23	2.00e-06	43.90
IUUC-Ggr-040116	Gaeumannomyces graminis	51.16	2.00e-08	50.80
IUUC-Gga-040544	Gallus gallus	29.47	2.00e-15	74.30
IUUC-Gac-042298	Gasterosteus aculeatus	28.18	2.00e-20	90.90
IUUC-Gma-044245	Glycine max	28.37	4.00e-33	132.00
IUUC-Ggo-045125	Gorilla gorilla	27.42	6.00e-12	62.80
IUUC-Hsa-046519	Homo sapiens	27.42	6.00e-12	62.80
IUUC-Hvu-047832	Hordeum vulgare	29.81	9.00e-23	98.60
IUUC-Itr-048295	Ictidomys tridecemlineatus	27.42	2.00e-11	61.20
IUUC-Kpa-049314	Komagataella pastoris	25.19	2.00e-15	74.30
IUUC-Lch-049719	Latimeria chalumnae	31.20	5.00e-19	86.30
IUUC-Lpe-051087	Leersia perrieri	28.25	4.00e-22	96.70
IUUC-Loc-051758	Lepisosteus oculatus	27.96	5.00e-20	89.40
IUUC-Laf-054589	Loxodonta africana	28.92	4.00e-14	69.70
IUUC-Mcc-055860	Macaca mulatta	28.97	2.00e-17	80.90
IUUC-Meu-056459	Macropus eugenii	30.52	3.00e-20	90.10
IUUC-Mor-057287	Magnaporthe oryzae	27.31	3.00e-10	57.00
IUUC-Mtr-058148	Medicago truncatula	27.18	2.00e-20	91.30
IUUC-Mvi-060220	Microbotryum violaceum	31.29	2.00e-10	57.80
IUUC-Mmr-061159	Microcebus murinus	27.82	4.00e-12	63.50
IUUC-Mdo-062742	Monodelphis domestica	26.80	3.00e-25	106.00
IUUC-Mmu-063258	Mus musculus	29.73	5.00e-15	72.80
IUUC-Mac-064724	Musa acuminata	27.48	7.00e-28	115.00
IUUC-Mpu-066684	Mustela putorius furo	29.32	3.00e-17	80.10
IUUC-Mlu-067787	Myotis lucifugus	27.36	3.00e-19	86.70
IUUC-Nfi-068390	Neosartorya fischeri	50.00	9.00e-10	55.50
IUUC-Ncr-068685	Neurospora crassa	24.91	6.00e-16	75.90
IUUC-Nle-069655	Nomascus leucogenys	27.62	2.00e-13	68.20
IUUC-Opr-070234	Ochotona princeps	50.00	3.00e-04	37.00
IUUC-Ont-072484	Oreochromis niloticus	26.68	1.00e-21	94.70
IUUC-Oan-073572	Ornithorhynchus anatinus	25.73	6.00e-18	82.40
IUUC-Ocu-074831	Oryctolagus cuniculus	28.23	1.00e-12	65.50
IUUC-Oba-075392	Oryza barthii	27.88	4.00e-20	90.10
IUUC-Obr-076909	Oryza brachyantha	27.08	6.00e-22	95.90
IUUC-Ogl-077152	Oryza glaberrima	31.13	3.00e-16	77.00
IUUC-Ogu-078883	Oryza glumaepatula	27.88	3.00e-20	90.10
IUUC-Oin-079817	Oryza indica	27.51	2.00e-19	87.40
IUUC-Olo-080929	Oryza longistaminata	27.51	2.00e-19	87.80
IUUC-Ome-081866	Oryza meridionalis	27.88	3.00e-20	90.10
IUUC-Oni-083092	Oryza nivara	27.51	2.00e-19	87.40
IUUC-Opu-083756	Oryza punctata	27.51	3.00e-20	90.50
IUUC-Oru-084816	Oryza rufipogon	27.51	2.00e-19	87.40
IUUC-Osa-086112	Oryza sativa	27.51	2.00e-19	87.40
IUUC-Ola-086540	Oryzias latipes	29.13	9.00e-15	72.00
IUUC-Olu-087843	Ostreococcus lucimarinus	30.77	1.00e-25	107.00
IUUC-Oga-089075	Otolemur garnettii	26.62	8.00e-18	82.00
IUUC-Oar-090387	Ovis aries	29.48	8.00e-16	75.50
IUUC-Ptr-091165	Pan troglodytes	27.42	7.00e-12	62.40
IUUC-Pan-092009	Papio anubis	27.27	9.00e-13	65.50
IUUC-Psi-093477	Pelodiscus sinensis	31.91	9.00e-08	48.90
IUUC-Pma-094640	Petromyzon marinus	34.09	1.10e-01	28.90
IUUC-Ppa-095654	Physcomitrella patens	30.08	6.00e-23	99.40
IUUC-Pfo-096607	Poecilia formosa	27.75	9.00e-20	88.60
IUUC-Pab-097738	Pongo abelii	28.97	2.00e-17	80.90
IUUC-Pop-099642	Populus trichocarpa	28.42	2.00e-22	97.80
IUUC-Pca-100652	Procavia capensis	33.74	1.00e-09	54.70
IUUC-Ppe-101830	Prunus persica	32.67	3.00e-17	80.10
IUUC-Pva-102412	Pteropus vampyrus	28.97	1.00e-17	81.30
IUUC-Rno-104844	Rattus norvegicus	29.30	2.00e-14	70.90
IUUC-Sce-106214	Saccharomyces cerevisiae	46.00	1.00e-08	52.00
IUUC-Sha-106918	Sarcophilus harrisii	29.72	2.00e-17	80.90
IUUC-Sja-107851	Schizosaccharomyces japonicus	27.96	8.00e-24	102.00
IUUC-Spo-108298	Schizosaccharomyces pombe	27.87	1.00e-24	104.00
IUUC-Ssl-108382	Sclerotinia sclerotiorum	26.85	9.00e-14	68.60
IUUC-Smo-109518	Selaginella moellendorffii	30.11	1.00e-14	71.20
IUUC-Sit-109813	Setaria italica	29.18	2.00e-23	100.00
IUUC-Sly-111480	Solanum lycopersicum	28.13	2.00e-32	130.00
IUUC-Stu-112054	Solanum tuberosum	28.30	8.00e-30	122.00
IUUC-Sar-112925	Sorex araneus	26.67	7.00e-10	55.80
IUUC-Sbi-114835	Sorghum bicolor	32.00	1.00e-16	78.60
IUUC-Ssc-115460	Sus scrofa	30.12	2.00e-17	80.90
IUUC-Tgu-116918	Taeniopygia guttata	26.82	4.00e-20	89.70
IUUC-Tru-118651	Takifugu rubripes	25.57	1.00e-20	91.70
IUUC-Tsy-118836	Tarsius syrichta	26.02	2.00e-05	40.80
IUUC-Tni-120493	Tetraodon nigroviridis	29.32	2.00e-22	97.40
IUUC-Tca-121594	Theobroma cacao	27.51	1.00e-28	118.00
IUUC-Tre-121911	Trichoderma reesei	53.06	5.00e-09	52.80
IUUC-Tae-125354	Triticum aestivum	28.52	3.00e-21	93.60
IUUC-Tur-126610	Triticum urartu	29.66	3.00e-21	94.40
IUUC-Tme-127092	Tuber melanosporum	28.38	2.00e-14	71.20
IUUC-Tbe-127493	Tupaia belangeri	26.02	4.00e-06	43.50
IUUC-Ttr-128464	Tursiops truncatus	27.35	9.00e-13	65.50
IUUC-Vda-129946	Verticillium dahliae	28.50	4.00e-10	57.00
IUUC-Vpa-130357	Vicugna pacos	37.50	3.00e-07	47.00
IUUC-Vvi-131039	Vitis vinifera	30.51	1.00e-27	115.00
IUUC-Xtr-132679	Xenopus tropicalis	36.36	9.00e-07	45.80
IUUC-Xma-133647	Xiphophorus maculatus	29.50	2.00e-18	84.70
IUUC-Yli-134615	Yarrowia lipolytica	25.97	8.00e-17	79.00
IUUC-Zma-135929	Zea mays	27.12	8.00e-30	122.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence