iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Cel-018189

Ensembl Protein ID

F58A3.1a.1

UniProt Accession

G5EEL0; G5EEL0_CAEEL

Genbank Protein ID

AAB38366.1; CAB02669.1

Protein Name

F58A3.1a; LIM Domain Binding protein

Genbank Nucleotide ID

U80220; BX284606

Gene Name

ldb-1; CELE_F58A3.1; F58A3.1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
WBGene00002261	F58A3.1a.1	F58A3.1a.1
WBGene00002261	F58A3.1c	F58A3.1c

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/U-box	31.42	2.00e-24	111.00	IUUC-Dme-031667

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MYGHHPDYGY GNYGHPPPFA GPESSNSHYG MPPSQGTNSQ NNMMMRSQAT EPQPIGNTVS 60
PLEFRIHDMN RRLYIFSSTG VSENDQQQWW DAFSHEFFDD DCKLWFVIGS EPVAFASRER 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTGTGTGG TTATTTTTCT CAAATTTTTA TTTTCAGACA ACGGGAACAA TCAACACGGC 60
ACAGAGGCTG CCTTCGGGAG GCTTGCTCAA TCATACCGTA TTCAAGATTT ATTGTTCATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR029005--LIM-bd/SEUSS

Gene Ontology

GO:0030274--F:LIM domain binding
GO:0003700--F:transcription factor activity, sequence-specific DNA binding
GO:0040011--P:locomotion
GO:0007638--P:mechanosensory behavior
GO:0034504--P:protein localization to nucleus
GO:0007416--P:synapse assembly
GO:0040025--P:vulval development

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002031	Ailuropoda melanoleuca	33.47	5.00e-31	127.00
IUUC-Apl-004210	Anas platyrhynchos	34.02	1.00e-32	132.00
IUUC-Aca-005241	Anolis carolinensis	31.02	4.00e-40	157.00
IUUC-Ame-010910	Astyanax mexicanus	33.89	2.00e-31	128.00
IUUC-Bgr-012180	Blumeria graminis	18.07	2.00e-04	40.00
IUUC-Bta-012596	Bos taurus	34.48	1.00e-30	125.00
IUUC-Bci-013927	Botrytis cinerea	20.00	2.00e-05	43.50
IUUC-Cja-019586	Callithrix jacchus	34.05	1.00e-30	125.00
IUUC-Cfa-021188	Canis familiaris	33.47	8.00e-31	126.00
IUUC-Cpo-022350	Cavia porcellus	30.75	1.00e-38	152.00
IUUC-Csa-023816	Chlorocebus sabaeus	30.75	1.00e-38	152.00
IUUC-Cho-024958	Choloepus hoffmanni	38.64	9.00e-15	73.20
IUUC-Cin-025721	Ciona intestinalis	31.47	5.00e-27	113.00
IUUC-Csv-026065	Ciona savignyi	31.47	1.00e-25	109.00
IUUC-Dre-027356	Danio rerio	34.05	5.00e-30	124.00
IUUC-Dno-029918	Dasypus novemcinctus	33.47	1.00e-30	125.00
IUUC-Dor-030634	Dipodomys ordii	33.47	4.00e-30	124.00
IUUC-Dme-031667	Drosophila melanogaster	31.76	1.00e-26	113.00
IUUC-Ete-032246	Echinops telfairi	33.62	3.00e-30	124.00
IUUC-Eca-034015	Equus caballus	34.05	9.00e-31	126.00
IUUC-Eeu-034902	Erinaceus europaeus	33.47	4.00e-30	124.00
IUUC-Fca-035903	Felis catus	33.47	2.00e-30	125.00
IUUC-Fal-037407	Ficedula albicollis	34.50	1.00e-30	125.00
IUUC-Gmo-039466	Gadus morhua	33.24	8.00e-42	163.00
IUUC-Ggr-040030	Gaeumannomyces graminis	21.79	1.50e-02	33.90
IUUC-Gga-040214	Gallus gallus	33.89	5.00e-32	130.00
IUUC-Gac-042214	Gasterosteus aculeatus	32.13	2.00e-40	158.00
IUUC-Ggo-044988	Gorilla gorilla	34.05	1.00e-30	125.00
IUUC-Hsa-046092	Homo sapiens	34.05	1.00e-30	125.00
IUUC-Itr-047934	Ictidomys tridecemlineatus	30.75	1.00e-38	152.00
IUUC-Lch-049895	Latimeria chalumnae	37.61	9.00e-13	65.90
IUUC-Loc-052845	Lepisosteus oculatus	33.89	6.00e-32	130.00
IUUC-Laf-054538	Loxodonta africana	33.47	9.00e-30	122.00
IUUC-Mcc-055116	Macaca mulatta	34.05	2.00e-30	124.00
IUUC-Meu-056777	Macropus eugenii	34.31	1.00e-30	125.00
IUUC-Mpo-057376	Magnaporthe poae	19.77	5.90e-01	28.50
IUUC-Mla-059042	Melampsora laricipopulina	55.56	1.20e+00	25.80
IUUC-Mga-059716	Meleagris gallopavo	34.93	7.00e-31	126.00
IUUC-Mmr-060649	Microcebus murinus	34.05	1.00e-30	125.00
IUUC-Mdo-062535	Monodelphis domestica	34.50	8.00e-31	126.00
IUUC-Mmu-064036	Mus musculus	34.05	1.00e-30	125.00
IUUC-Mpu-065719	Mustela putorius furo	30.75	1.00e-38	152.00
IUUC-Mlu-067219	Myotis lucifugus	33.47	9.00e-31	126.00
IUUC-Ncr-068691	Neurospora crassa	19.29	5.00e-08	52.00
IUUC-Nle-068983	Nomascus leucogenys	34.05	1.00e-30	125.00
IUUC-Opr-070467	Ochotona princeps	33.47	4.00e-30	124.00
IUUC-Ont-071566	Oreochromis niloticus	33.90	6.00e-32	130.00
IUUC-Oan-073368	Ornithorhynchus anatinus	33.47	2.00e-30	125.00
IUUC-Ocu-074854	Oryctolagus cuniculus	34.05	2.00e-30	125.00
IUUC-Ola-086364	Oryzias latipes	34.31	1.00e-31	129.00
IUUC-Oga-088235	Otolemur garnettii	34.48	7.00e-31	126.00
IUUC-Oar-089547	Ovis aries	33.47	8.00e-31	126.00
IUUC-Ptr-091423	Pan troglodytes	34.05	1.00e-30	125.00
IUUC-Pan-092378	Papio anubis	33.47	4.00e-30	124.00
IUUC-Psi-093638	Pelodiscus sinensis	34.93	9.00e-31	126.00
IUUC-Pma-094384	Petromyzon marinus	57.78	8.00e-11	58.50
IUUC-Pfo-096031	Poecilia formosa	33.89	4.00e-31	127.00
IUUC-Pab-097886	Pongo abelii	34.05	1.00e-30	125.00
IUUC-Pca-101138	Procavia capensis	33.47	4.00e-30	124.00
IUUC-Pva-103215	Pteropus vampyrus	34.05	9.00e-31	126.00
IUUC-Rno-105968	Rattus norvegicus	34.05	1.00e-30	125.00
IUUC-Sha-107595	Sarcophilus harrisii	34.31	6.00e-31	127.00
IUUC-Ssl-108527	Sclerotinia sclerotiorum	17.27	1.00e-04	40.40
IUUC-Sar-113076	Sorex araneus	32.33	5.00e-26	110.00
IUUC-Ssc-115755	Sus scrofa	33.47	5.00e-30	123.00
IUUC-Tgu-117326	Taeniopygia guttata	34.50	1.00e-30	125.00
IUUC-Tru-117858	Takifugu rubripes	34.06	4.00e-31	127.00
IUUC-Tsy-119296	Tarsius syrichta	30.00	1.00e-22	99.40
IUUC-Tni-119822	Tetraodon nigroviridis	33.33	1.00e-28	119.00
IUUC-Tbe-127366	Tupaia belangeri	32.37	3.00e-27	114.00
IUUC-Ttr-128484	Tursiops truncatus	34.47	4.00e-27	114.00
IUUC-Vpa-130304	Vicugna pacos	34.05	3.00e-30	124.00
IUUC-Xtr-132062	Xenopus tropicalis	33.89	2.00e-31	128.00
IUUC-Xma-134288	Xiphophorus maculatus	33.89	9.00e-32	129.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence