iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114085

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000766

Gene Name

SORBI_007G011400

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb07g001110	Sb07g001110.1	Sb07g001110.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.40e-29	102.8	229	301

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p++f+Cp+slelM+dPv+++sG+ty+r +I+ wl++g + cP+trq+l +++l+Pn+t+++li +wce++++
   Q: 229  IPADFCCPLSLELMSDPVIVASGQTYERVYIKLWLDEGFTICPKTRQRLGHSNLIPNYTVKALIANWCESHDI 301
           8*********************************************************************986 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MDNLSPSTLL NSISCLGALT SDVSTVRPKP IQKYCKNVYD VSSIVNPLVE DLCKSPEEQL 60
NEVLKDLDTA VNEASGLIGN WHQTTSKIYF GWQIESVISD IQGCSLQLCQ LVNSLLPSLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGATAACC TCTCTCCAAG CACTCTGCTC AACAGTATCT CGTGTCTTGG CGCCTTAACA 60
TCTGATGTCT CTACCGTGAG ACCCAAGCCT ATTCAGAAGT ATTGCAAAAA TGTATATGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR011987--ATPase_V1-cplx_hsu_C
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_07g001110

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000760	Aegilops tauschii	79.50	0.00e+00	1247.00
IUUC-Atr-002793	Amborella trichopoda	52.10	0.00e+00	767.00
IUUC-Aly-006261	Arabidopsis lyrata	50.12	0.00e+00	697.00
IUUC-Ath-006925	Arabidopsis thaliana	50.43	0.00e+00	699.00
IUUC-Ate-010256	Aspergillus terreus	28.30	5.00e-21	95.10
IUUC-Bdi-014197	Brachypodium distachyon	80.46	0.00e+00	1270.00
IUUC-Bol-015762	Brassica oleracea	70.25	1.00e-137	483.00
IUUC-Bra-018049	Brassica rapa	49.45	0.00e+00	672.00
IUUC-Gma-043920	Glycine max	52.98	0.00e+00	719.00
IUUC-Hvu-047089	Hordeum vulgare	81.77	0.00e+00	1338.00
IUUC-Itr-048617	Ictidomys tridecemlineatus	27.21	1.00e-09	58.20
IUUC-Kpa-049403	Komagataella pastoris	28.84	5.00e-23	101.00
IUUC-Lpe-051326	Leersia perrieri	84.29	0.00e+00	1337.00
IUUC-Mtr-057910	Medicago truncatula	53.55	0.00e+00	726.00
IUUC-Mac-064791	Musa acuminata	83.17	2.00e-144	504.00
IUUC-Oba-075484	Oryza barthii	84.62	0.00e+00	1289.00
IUUC-Obr-076317	Oryza brachyantha	84.50	0.00e+00	1288.00
IUUC-Ogl-077857	Oryza glaberrima	84.62	0.00e+00	1292.00
IUUC-Ogu-078826	Oryza glumaepatula	84.50	0.00e+00	1290.00
IUUC-Oin-079538	Oryza indica	84.62	0.00e+00	1292.00
IUUC-Olo-080425	Oryza longistaminata	83.19	0.00e+00	1257.00
IUUC-Ome-081524	Oryza meridionalis	84.62	0.00e+00	1295.00
IUUC-Oni-082077	Oryza nivara	84.62	0.00e+00	1290.00
IUUC-Opu-083165	Oryza punctata	84.13	0.00e+00	1308.00
IUUC-Oru-085180	Oryza rufipogon	84.38	0.00e+00	1304.00
IUUC-Osa-085315	Oryza sativa	84.50	0.00e+00	1307.00
IUUC-Ppa-095522	Physcomitrella patens	67.28	2.00e-115	408.00
IUUC-Pop-099220	Populus trichocarpa	76.75	9.00e-153	533.00
IUUC-Ppe-101233	Prunus persica	69.45	5.00e-137	480.00
IUUC-Sja-107762	Schizosaccharomyces japonicus	26.64	9.00e-19	87.40
IUUC-Spo-108349	Schizosaccharomyces pombe	27.42	5.00e-18	85.10
IUUC-Smo-108857	Selaginella moellendorffii	60.98	7.00e-87	314.00
IUUC-Sit-110349	Setaria italica	92.16	0.00e+00	1490.00
IUUC-Sly-111082	Solanum lycopersicum	52.81	0.00e+00	753.00
IUUC-Stu-112751	Solanum tuberosum	53.24	0.00e+00	751.00
IUUC-Tca-121129	Theobroma cacao	56.39	0.00e+00	810.00
IUUC-Tae-125886	Triticum aestivum	82.25	0.00e+00	1319.00
IUUC-Tur-126525	Triticum urartu	74.41	0.00e+00	1219.00
IUUC-Vvi-131364	Vitis vinifera	54.30	0.00e+00	752.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence