iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Obr-076798

Ensembl Protein ID

OB10G21500.1

UniProt Accession

J3N3Q2; J3N3Q2_ORYBR

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OB10G21500	OB10G21500.1	OB10G21500.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.50e-36	122.8	184	219
UBD/Beta-Prp	3.50e-54	184.7	14	256

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           H+++++c++f +   ll++Gs D+t+k WDl t+ l
   Q: 184  HEGPINCIDFhPHeFLLATGSADKTVKFWDLETFEL 219
           99********9776789**************99876 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfs 103
           +h s ++cvkf  + +++l+tg++d+++ +w + +++++ slsg +++v +v+f++++ ++  gs+ +tikvwd++  k v+t++gh +s  sl+f+
   Q: 14   AHASDVNCVKFgRRTSRILITGGEDQKVNLWAIGKPSAILSLSGLTSPVESVSFDSSEVMIGAGSSSGTIKVWDVEEAKVVRTFTGHRSSCASLDFH 110
           5666677788888888888888888888888888888888888888888888888888777788888888888888888888888888888888888 PP
   S: 104  psgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsl 200
           p g++++sGs+d   ++wd++++ c++ t +gh++ + ++++ pdg+ +vsG+ D+ v++Wdl  gkll++++  h++++++++f++  + l++gs 
   Q: 111  PFGEFFASGSSDTNMKIWDMRKKGCIH-TYKGHTRQIDVLKFTPDGRWIVSGGSDNSVKIWDLTAGKLLHDFRI-HEGPINCIDFHPHEFLLATGSA 205
           888888888888888888888888888.8888888888888888888888888888888888888888888886.8888888888888888888888 PP
   S: 201  dgtvklwdlqtgec........vrtlnghtdnvksvrfspnderlvsgssDg 244
           d+tvk+wdl+t e          r++ +  + v+s+ f ++++ l +g  ++
   Q: 206  DKTVKFWDLETFELigssgpenSREYFEPASVVRSMTFNKDGKSLFCGL-HE 256
           8888888888444444444444778888888888888888888887774.34 PP

Organism

Oryza brachyantha

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MDTKRAYKLQ EFVAHASDVN CVKFGRRTSR ILITGGEDQK VNLWAIGKPS AILSLSGLTS 60
PVESVSFDSS EVMIGAGSSS GTIKVWDVEE AKVVRTFTGH RSSCASLDFH PFGEFFASGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTATGGCCTA CGCTTGTTAA GGTGGGTAAC ATATATTGAA GATGCCTAAC ACGGTAACTG 60
ATGGAAATAT CCATAACAAG TTTAATTTGC CCCCTAAATA ACCTAATGGG GAGAGCAATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

obr:102709771

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000873	Aegilops tauschii	56.10	0.00e+00	884.00
IUUC-Atr-002899	Amborella trichopoda	46.02	0.00e+00	684.00
IUUC-Bdi-014552	Brachypodium distachyon	65.36	0.00e+00	1082.00
IUUC-Hvu-047781	Hordeum vulgare	62.80	0.00e+00	1043.00
IUUC-Lpe-051597	Leersia perrieri	85.02	0.00e+00	828.00
IUUC-Oba-075845	Oryza barthii	82.18	0.00e+00	1438.00
IUUC-Ogu-079022	Oryza glumaepatula	84.00	0.00e+00	1487.00
IUUC-Oin-080135	Oryza indica	84.69	0.00e+00	1493.00
IUUC-Olo-080665	Oryza longistaminata	83.31	0.00e+00	1297.00
IUUC-Ome-081884	Oryza meridionalis	84.51	0.00e+00	1472.00
IUUC-Oni-082726	Oryza nivara	82.51	0.00e+00	1436.00
IUUC-Opu-083637	Oryza punctata	83.41	0.00e+00	1493.00
IUUC-Oru-085123	Oryza rufipogon	84.57	0.00e+00	1489.00
IUUC-Osa-086267	Oryza sativa	84.57	0.00e+00	1489.00
IUUC-Sit-109837	Setaria italica	64.07	0.00e+00	1104.00
IUUC-Tae-123176	Triticum aestivum	61.26	0.00e+00	994.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence