iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007379

UUCD1 version

UUC-ArT-00498

Ensembl Protein ID

AT5G42340.1

UniProt Accession

Q681N2; Q9FII3; PUB15_ARATH

Genbank Protein ID

BAB10475.1; AED94798.1; BAD43348.1

Protein Name

U-box domain-containing protein 15; Plant U-box protein 15; RING-type E3 ubiquitin transferase PUB15

Genbank Nucleotide ID

AB016888; CP002688; AK175585

Gene Name

PUB15; At5g42340; MDH9.3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G42340	AT5G42340.1	AT5G42340.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.50e-31	109.2	290	361

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           +p+eflCpI+le+M dPv++++G+ty+++sI+kw++ g+ktcP+trq+l++ +l Pn +l++li +wce+n+
   Q: 290  LPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLAPNFALKNLIMQWCEKNN 361
           599******************************************************************997 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MVDVMDTDEE ATGDAENRDE EVTAEEPIHD EVVDAVEIHE EEVKEDDDDC EGLVSDIVSI 60
VEFLDQINGY RRTQQKECFN LVRRLKILIP FLDEIRGFES PSCKHFLNRL RKVFLAAKKL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGAGAATCA CATTTCAAAA AAAGTTGGGT GAGAAGAAAA ACAAATCTTT TTTTTCTTTT 60
GTCTCTAAAA ATGAAACAAG AGAAAATTAA TCTTACAATT TCCTTAACGT TTGCTTTTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

ath:AT5G42340

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000563	Aegilops tauschii	53.55	2.00e-177	614.00
IUUC-Atr-002787	Amborella trichopoda	60.45	0.00e+00	681.00
IUUC-Aly-006301	Arabidopsis lyrata	94.24	0.00e+00	1155.00
IUUC-Bdi-014836	Brachypodium distachyon	54.03	5.00e-172	597.00
IUUC-Bol-016076	Brassica oleracea	85.22	0.00e+00	1042.00
IUUC-Bra-017350	Brassica rapa	87.62	0.00e+00	1017.00
IUUC-Csv-026196	Ciona savignyi	31.85	2.00e-11	64.70
IUUC-Gma-042863	Glycine max	63.46	0.00e+00	742.00
IUUC-Hvu-047325	Hordeum vulgare	52.92	2.00e-166	578.00
IUUC-Lpe-051266	Leersia perrieri	50.95	3.00e-160	558.00
IUUC-Mtr-058419	Medicago truncatula	61.79	0.00e+00	728.00
IUUC-Mac-065150	Musa acuminata	47.86	3.00e-150	524.00
IUUC-Oba-075533	Oryza barthii	54.03	1.00e-166	579.00
IUUC-Obr-076561	Oryza brachyantha	54.53	4.00e-169	587.00
IUUC-Ogl-077209	Oryza glaberrima	54.03	1.00e-166	579.00
IUUC-Ogu-078607	Oryza glumaepatula	54.19	4.00e-167	580.00
IUUC-Oin-080162	Oryza indica	54.19	3.00e-167	581.00
IUUC-Olo-080856	Oryza longistaminata	54.52	7.00e-167	580.00
IUUC-Ome-081763	Oryza meridionalis	54.19	2.00e-167	582.00
IUUC-Oni-082893	Oryza nivara	54.19	4.00e-167	580.00
IUUC-Opu-084068	Oryza punctata	54.27	7.00e-167	580.00
IUUC-Oru-085267	Oryza rufipogon	54.19	4.00e-167	580.00
IUUC-Osa-085448	Oryza sativa	54.19	4.00e-167	580.00
IUUC-Pop-099995	Populus trichocarpa	64.55	0.00e+00	763.00
IUUC-Ppe-101219	Prunus persica	67.87	0.00e+00	793.00
IUUC-Sit-110533	Setaria italica	54.75	3.00e-178	617.00
IUUC-Sly-111424	Solanum lycopersicum	59.61	0.00e+00	699.00
IUUC-Stu-112097	Solanum tuberosum	59.77	0.00e+00	699.00
IUUC-Sbi-114691	Sorghum bicolor	53.38	1.00e-155	542.00
IUUC-Tca-121852	Theobroma cacao	65.37	0.00e+00	747.00
IUUC-Tae-125148	Triticum aestivum	53.10	1.00e-177	615.00
IUUC-Tur-126004	Triticum urartu	56.42	3.00e-164	570.00
IUUC-Vvi-131187	Vitis vinifera	65.74	0.00e+00	695.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence