iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121661

Ensembl Protein ID

EOY02081

UniProt Accession

A0A061EAX4; A0A061EAX4_THECC

Genbank Protein ID

EOY02081.1

Protein Name

Rad23 UV excision repair protein family isoform 1

Genbank Nucleotide ID

CM001880

Gene Name

TCM_011819

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_011819	EOY02081	EOY02081
TCM_011819	EOY02082	EOY02082

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	8.60e-24	83.9	153	194
ULD/UDP/UBQ/UBQ_PIM	2.40e-24	86.0	1	79

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           +e +++q+ +MG   +dr+ +++aLraa+nn+e+AveyL++g
   Q: 153  LEGAIQQILDMGggtWDRDIVVRALRAAYNNPERAVEYLYSG 194
           5789***********************************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksks 76
           mk++vktlkg++f +ev+ +d v+++K++i++++g   +p++qq LI++Gk+LkDdttL e+ + ++s+++++++k+ks
   Q: 1    MKIFVKTLKGSHFDVEVKAEDVVSDVKKNIETVQGadvYPAAQQMLIHKGKVLKDDTTLAENSVTENSFIVIMLTKNKS 79
           99**************************************************************************985 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MKIFVKTLKG SHFDVEVKAE DVVSDVKKNI ETVQGADVYP AAQQMLIHKG KVLKDDTTLA 60
ENSVTENSFI VIMLTKNKSS SGEGSTASTA PTTKAPQASV PPPAPTPAST APVATTAPAA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACTTATTTC TCTCTCAATA ATTTAATGGA AACAATTTTG GATTATTGCT TTTTGTAGAA 60
TTGGCAAAGT TTAATAATAA TGAGTATGTT TTTTGTTGAA TACTAATGTT GATAAGCCGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001195	Ailuropoda melanoleuca	37.40	8.00e-30	123.00
IUUC-Atr-003116	Amborella trichopoda	84.25	1.00e-101	362.00
IUUC-Apl-003371	Anas platyrhynchos	35.73	1.00e-36	146.00
IUUC-Ath-006688	Arabidopsis thaliana	69.35	2.00e-122	431.00
IUUC-Bgr-012056	Blumeria graminis	32.11	3.00e-28	118.00
IUUC-Bci-013933	Botrytis cinerea	37.41	8.00e-36	143.00
IUUC-Bdi-014718	Brachypodium distachyon	59.12	1.00e-109	389.00
IUUC-Bol-015354	Brassica oleracea	67.01	1.00e-119	421.00
IUUC-Bra-016769	Brassica rapa	66.58	5.00e-123	433.00
IUUC-Cne-027056	Cryptococcus neoformans	42.61	5.00e-13	68.20
IUUC-Dse-031336	Dothistroma septosporum	46.15	1.00e-19	90.10
IUUC-Eeu-034721	Erinaceus europaeus	46.27	4.00e-11	61.60
IUUC-Gma-044370	Glycine max	84.40	4.00e-114	404.00
IUUC-Hvu-047832	Hordeum vulgare	64.14	3.00e-83	301.00
IUUC-Lch-050553	Latimeria chalumnae	37.85	5.00e-29	120.00
IUUC-Lpe-051087	Leersia perrieri	68.77	7.00e-90	323.00
IUUC-Mtr-058148	Medicago truncatula	80.16	2.00e-110	391.00
IUUC-Mla-058961	Melampsora laricipopulina	42.34	3.00e-23	102.00
IUUC-Mac-064724	Musa acuminata	65.78	4.00e-136	477.00
IUUC-Mlu-067999	Myotis lucifugus	36.65	8.00e-31	127.00
IUUC-Ncr-068685	Neurospora crassa	34.01	1.00e-33	136.00
IUUC-Opr-070234	Ochotona princeps	46.43	7.00e-10	57.40
IUUC-Oba-075951	Oryza barthii	59.26	1.00e-106	379.00
IUUC-Ogl-077152	Oryza glaberrima	59.26	1.00e-106	379.00
IUUC-Ogu-078896	Oryza glumaepatula	59.26	3.00e-107	380.00
IUUC-Oin-079817	Oryza indica	65.74	1.00e-87	315.00
IUUC-Olo-080929	Oryza longistaminata	65.34	5.00e-87	313.00
IUUC-Ome-081866	Oryza meridionalis	65.74	9.00e-88	316.00
IUUC-Oni-083092	Oryza nivara	65.74	1.00e-87	315.00
IUUC-Opu-083756	Oryza punctata	67.33	1.00e-90	325.00
IUUC-Oru-084816	Oryza rufipogon	65.74	1.00e-87	315.00
IUUC-Osa-086112	Oryza sativa	65.74	1.00e-87	315.00
IUUC-Ola-086540	Oryzias latipes	35.79	1.00e-30	126.00
IUUC-Ppe-101830	Prunus persica	72.09	6.00e-125	439.00
IUUC-Ptt-103717	Puccinia triticina	46.67	3.00e-26	112.00
IUUC-Sce-106214	Saccharomyces cerevisiae	33.83	9.00e-13	67.00
IUUC-Spo-108298	Schizosaccharomyces pombe	34.01	1.00e-42	166.00
IUUC-Ssl-108382	Sclerotinia sclerotiorum	44.90	2.00e-18	85.50
IUUC-Sit-110235	Setaria italica	70.68	2.00e-84	305.00
IUUC-Sly-111899	Solanum lycopersicum	70.15	4.00e-138	483.00
IUUC-Stu-112054	Solanum tuberosum	68.86	2.00e-133	468.00
IUUC-Sbi-114835	Sorghum bicolor	64.75	5.00e-77	280.00
IUUC-Sre-114894	Sporisorium reilianum	55.36	5.00e-12	65.10
IUUC-Tur-126101	Triticum urartu	61.89	5.00e-76	277.00
IUUC-Uma-129484	Ustilago maydis	51.72	1.00e-11	63.90
IUUC-Vvi-131039	Vitis vinifera	70.21	1.00e-134	472.00
IUUC-Zma-135463	Zea mays	67.20	1.00e-76	279.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence