iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pab-098053

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

U4/U6.U5 tri-snRNP-associated protein 2

Genbank Nucleotide ID

ABGA01114189

Gene Name

USP39

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPPYG00000012222.2	ENSPPYT00000014186.2	ENSPPYP00000013631.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	1.10e-51	176.1	225	555

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelw..kskkkavsprellkalkkeaee.fsg 86
           +Gl+N+ +  Y N+vLQ+Lsn+p+lr+++le+++ k  ++ p +    l++ + +l+++lw   + k +vsp+e+l+a+  ++++ f+ 
   Q: 225  VGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWnpRNFKAHVSPHEMLQAVVLCSKKtFQI 313
           6*********************************9999***********************999999**************99999*** PP
   S: 87   yeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlk................sqikclec 159
           ++q D  +fl+++l++l+++l                          +kkk+k++++d+Fqg+++                +q+  ++ 
   Q: 314  TKQGDGVDFLSWFLNALHSAL------------------------GGTKKKKKTIVTDVFQGSMRiftkklphpdlpaeekEQLLHNDE 378
           *********************........................4578888889999999999888899999999998889******* PP
   S: 160  dnvssreepfldlslpvpgkeetkke.........slqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsf 239
            +++  e++f++l+l++p     k e          l ++L++f    e e    y++ k     +  k+++l+klP++Li+ +kRf  
   Q: 379  YQETMVESTFMYLTLDLPTAPLYKDEkeqliipqvPLFNILAKFNGITEKE----YKTYK----ENFLKRFQLTKLPPYLIFCIKRF-- 457
           ******************877776664455566666666666666666655....44333....3489*******************.. PP
   S: 240  seeqksrekinkkvefple.LdlspfctspeekqkekkkYeLiavvvHsGslssGHYvayvkn.ekgkWllfdDskVtevkeeevleet 326
           ++++ + ek+ + v+fp++ +dl+++++++ ++++++++Y+Lia +vH G++s+G Y  +v +  +gkW+++ D +Vt +  + +    
   Q: 458  TKNNFFVEKNPTIVNFPITnVDLREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHhGTGKWYELQDLQVTDILPQMITL-- 544
           88889********************************************************9935666******************9.. PP
   S: 327  gstaYvlfYkrr 338
            s+aY+ ++krr
   Q: 545  -SEAYIQIWKRR 555
           .********985 PP

Organism

Pongo abelii

Protein Sequence
(Fasta)

MSGRSKRESR GSTRGKRESE SRGSSGRVKR ERDREREPEA ASSRGSPVRV KREVEPASAR 60
EAPASVVPFV RVKREREVDE DSEPEREVRA KNGRVDSEDR RSRHCPYLDT INRSVLDFDF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GACTCGGCCG GTACTGGAGA TGTCCGGCCG GTCTAAGCGG GAGTCTCGCG GTTCCACCCG 60
CGGGAAGCGA GAGTCCGAGT CACGGGGCAG CTCCGGTCGC GTCAAGCGGG AGCGAGATCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001394--Peptidase_C19_UCH
IPR033809--USP39
IPR028889--USP_dom
IPR013083--Znf_RING/FYVE/PHD
IPR001607--Znf_UBP

PROSITE

PS50235--USP_3
PS50271--ZF_UBP

Pfam

PF00443--UCH
PF02148--zf-UBP

SMART

SM00290--ZnF_UBP

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0008270--F:zinc ion binding
GO:0016579--P:protein deubiquitination
GO:0000245--P:spliceosomal complex assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000483	Aegilops tauschii	52.93	5.00e-128	451.00
IUUC-Aml-001846	Ailuropoda melanoleuca	98.47	0.00e+00	1058.00
IUUC-Atr-002758	Amborella trichopoda	51.28	2.00e-128	452.00
IUUC-Apl-003336	Anas platyrhynchos	91.62	7.00e-176	609.00
IUUC-Aca-004846	Anolis carolinensis	97.36	0.00e+00	905.00
IUUC-Aly-005683	Arabidopsis lyrata	50.98	7.00e-117	414.00
IUUC-Ath-007661	Arabidopsis thaliana	50.33	4.00e-116	411.00
IUUC-Ago-007802	Ashbya gossypii	31.60	1.00e-60	227.00
IUUC-Acl-008304	Aspergillus clavatus	41.43	4.00e-91	328.00
IUUC-Afl-008735	Aspergillus flavus	58.12	1.00e-40	160.00
IUUC-Afu-009100	Aspergillus fumigatus	39.23	3.00e-89	322.00
IUUC-Ani-009138	Aspergillus nidulans	48.89	6.00e-94	338.00
IUUC-Ang-009661	Aspergillus niger	44.61	9.00e-95	340.00
IUUC-Aor-010235	Aspergillus oryzae	38.57	8.00e-79	287.00
IUUC-Ate-010346	Aspergillus terreus	36.33	2.00e-71	263.00
IUUC-Ame-011688	Astyanax mexicanus	89.25	0.00e+00	845.00
IUUC-Bgr-011998	Blumeria graminis	47.82	5.00e-115	407.00
IUUC-Bta-013407	Bos taurus	98.05	0.00e+00	1027.00
IUUC-Bci-013977	Botrytis cinerea	49.13	3.00e-115	409.00
IUUC-Bdi-014361	Brachypodium distachyon	53.13	2.00e-134	472.00
IUUC-Bol-016317	Brassica oleracea	50.44	4.00e-115	408.00
IUUC-Bra-017952	Brassica rapa	49.17	4.00e-116	411.00
IUUC-Cel-018491	Caenorhabditis elegans	62.39	8.00e-178	616.00
IUUC-Cja-019134	Callithrix jacchus	99.43	0.00e+00	1073.00
IUUC-Cfa-020098	Canis familiaris	99.05	0.00e+00	1066.00
IUUC-Cpo-021595	Cavia porcellus	98.44	0.00e+00	1001.00
IUUC-Cre-022886	Chlamydomonas reinhardtii	50.81	2.00e-31	127.00
IUUC-Csa-024121	Chlorocebus sabaeus	99.61	0.00e+00	1059.00
IUUC-Cho-025057	Choloepus hoffmanni	77.34	3.00e-86	311.00
IUUC-Cin-025473	Ciona intestinalis	62.96	2.00e-64	238.00
IUUC-Csv-025815	Ciona savignyi	81.62	2.00e-117	416.00
IUUC-Cgl-026416	Colletotrichum gloeosporioides	44.71	9.00e-109	387.00
IUUC-Cne-026802	Cryptococcus neoformans	43.17	8.00e-100	357.00
IUUC-Dre-027870	Danio rerio	88.87	0.00e+00	838.00
IUUC-Dno-029655	Dasypus novemcinctus	94.41	0.00e+00	1046.00
IUUC-Dor-030762	Dipodomys ordii	98.86	0.00e+00	1016.00
IUUC-Dse-031441	Dothistroma septosporum	45.59	2.00e-107	382.00
IUUC-Dme-032101	Drosophila melanogaster	64.71	8.00e-180	623.00
IUUC-Ete-032841	Echinops telfairi	92.40	0.00e+00	980.00
IUUC-Eca-033463	Equus caballus	99.80	0.00e+00	1015.00
IUUC-Eeu-034438	Erinaceus europaeus	72.08	0.00e+00	737.00
IUUC-Fca-035774	Felis catus	98.86	0.00e+00	1064.00
IUUC-Fal-036988	Ficedula albicollis	93.45	0.00e+00	915.00
IUUC-Fox-037895	Fusarium oxysporum	45.57	8.00e-105	374.00
IUUC-Fso-038450	Fusarium solani	46.87	3.00e-106	378.00
IUUC-Gmo-038874	Gadus morhua	87.69	0.00e+00	823.00
IUUC-Ggr-040115	Gaeumannomyces graminis	44.82	2.00e-103	369.00
IUUC-Gac-041650	Gasterosteus aculeatus	85.71	0.00e+00	850.00
IUUC-Gma-043697	Glycine max	50.64	4.00e-128	451.00
IUUC-Ggo-044707	Gorilla gorilla	93.63	0.00e+00	1044.00
IUUC-Hsa-046041	Homo sapiens	99.81	0.00e+00	1063.00
IUUC-Hvu-047816	Hordeum vulgare	50.00	8.00e-122	430.00
IUUC-Itr-048945	Ictidomys tridecemlineatus	99.71	0.00e+00	688.00
IUUC-Lch-050419	Latimeria chalumnae	92.08	0.00e+00	899.00
IUUC-Lpe-051593	Leersia perrieri	53.70	3.00e-134	471.00
IUUC-Loc-052930	Lepisosteus oculatus	86.23	0.00e+00	859.00
IUUC-Lma-053256	Leptosphaeria maculans	48.05	1.00e-112	399.00
IUUC-Laf-053555	Loxodonta africana	98.46	0.00e+00	1016.00
IUUC-Mcc-055630	Macaca mulatta	99.61	0.00e+00	1059.00
IUUC-Meu-056579	Macropus eugenii	95.06	0.00e+00	627.00
IUUC-Mor-057078	Magnaporthe oryzae	42.44	1.00e-103	370.00
IUUC-Mpo-057607	Magnaporthe poae	37.86	9.00e-85	307.00
IUUC-Mtr-058644	Medicago truncatula	49.36	1.00e-127	450.00
IUUC-Mla-059120	Melampsora laricipopulina	40.88	5.00e-101	362.00
IUUC-Mvi-060429	Microbotryum violaceum	46.33	2.00e-68	253.00
IUUC-Mmr-061313	Microcebus murinus	98.48	0.00e+00	1019.00
IUUC-Mdo-062801	Monodelphis domestica	91.67	0.00e+00	1035.00
IUUC-Mmu-064424	Mus musculus	96.28	0.00e+00	1017.00
IUUC-Mac-064694	Musa acuminata	52.65	2.00e-130	459.00
IUUC-Mpu-065980	Mustela putorius furo	100.00	0.00e+00	859.00
IUUC-Mlu-067007	Myotis lucifugus	96.83	0.00e+00	1047.00
IUUC-Nfi-068274	Neosartorya fischeri	39.23	1.00e-89	324.00
IUUC-Ncr-068829	Neurospora crassa	47.53	3.00e-106	379.00
IUUC-Nle-069171	Nomascus leucogenys	100.00	0.00e+00	977.00
IUUC-Opr-070494	Ochotona princeps	90.68	0.00e+00	896.00
IUUC-Ont-072290	Oreochromis niloticus	86.21	0.00e+00	873.00
IUUC-Oan-073099	Ornithorhynchus anatinus	97.28	0.00e+00	957.00
IUUC-Ocu-074642	Oryctolagus cuniculus	98.65	0.00e+00	1013.00
IUUC-Oba-075886	Oryza barthii	53.04	2.00e-133	469.00
IUUC-Obr-076220	Oryza brachyantha	53.04	7.00e-134	470.00
IUUC-Ogl-077682	Oryza glaberrima	53.04	6.00e-134	470.00
IUUC-Ogu-078492	Oryza glumaepatula	52.83	1.00e-133	469.00
IUUC-Oin-079956	Oryza indica	53.04	8.00e-134	470.00
IUUC-Olo-080239	Oryza longistaminata	46.82	2.00e-105	377.00
IUUC-Ome-081573	Oryza meridionalis	53.04	4.00e-134	471.00
IUUC-Oni-082975	Oryza nivara	53.04	8.00e-134	470.00
IUUC-Opu-083724	Oryza punctata	53.26	3.00e-134	471.00
IUUC-Oru-084566	Oryza rufipogon	53.04	7.00e-134	470.00
IUUC-Osa-086008	Oryza sativa	53.04	7.00e-134	470.00
IUUC-Ola-086967	Oryzias latipes	89.40	0.00e+00	850.00
IUUC-Olu-087614	Ostreococcus lucimarinus	43.91	1.00e-96	346.00
IUUC-Oga-088047	Otolemur garnettii	80.90	0.00e+00	669.00
IUUC-Oar-089393	Ovis aries	99.23	0.00e+00	1052.00
IUUC-Ptr-090561	Pan troglodytes	100.00	0.00e+00	1065.00
IUUC-Pan-091812	Papio anubis	99.42	0.00e+00	1056.00
IUUC-Psi-093507	Pelodiscus sinensis	99.32	4.00e-172	596.00
IUUC-Pno-095104	Phaeosphaeria nodorum	46.92	4.00e-110	391.00
IUUC-Ppa-095995	Physcomitrella patens	51.63	4.00e-134	471.00
IUUC-Pfo-096754	Poecilia formosa	89.01	0.00e+00	863.00
IUUC-Pop-099230	Populus trichocarpa	51.34	4.00e-133	468.00
IUUC-Pca-100407	Procavia capensis	89.98	0.00e+00	914.00
IUUC-Ppe-101699	Prunus persica	52.39	2.00e-128	452.00
IUUC-Pva-103159	Pteropus vampyrus	95.75	0.00e+00	1060.00
IUUC-Pgr-103433	Puccinia graminis	42.62	2.00e-103	369.00
IUUC-Ptt-103701	Puccinia triticina	39.44	3.00e-91	328.00
IUUC-Pte-104281	Pyrenophora teres	47.61	2.00e-112	399.00
IUUC-Pyt-104714	Pyrenophora triticirepentis	47.61	3.00e-112	398.00
IUUC-Rno-105531	Rattus norvegicus	96.99	0.00e+00	1062.00
IUUC-Sce-106368	Saccharomyces cerevisiae	29.32	3.00e-46	179.00
IUUC-Sha-107093	Sarcophilus harrisii	96.82	0.00e+00	1000.00
IUUC-Sja-108004	Schizosaccharomyces japonicus	43.60	2.00e-114	405.00
IUUC-Spo-108018	Schizosaccharomyces pombe	47.38	7.00e-113	400.00
IUUC-Ssl-108460	Sclerotinia sclerotiorum	46.65	8.00e-107	380.00
IUUC-Smo-108892	Selaginella moellendorffii	52.37	9.00e-132	463.00
IUUC-Sit-110782	Setaria italica	54.19	1.00e-136	479.00
IUUC-Sly-111308	Solanum lycopersicum	52.17	2.00e-137	482.00
IUUC-Stu-112447	Solanum tuberosum	52.83	5.00e-137	481.00
IUUC-Sar-113352	Sorex araneus	82.83	0.00e+00	815.00
IUUC-Sbi-114806	Sorghum bicolor	54.74	1.00e-135	476.00
IUUC-Sre-115059	Sporisorium reilianum	53.57	4.00e-72	265.00
IUUC-Ssc-115677	Sus scrofa	97.62	0.00e+00	753.00
IUUC-Tru-118478	Takifugu rubripes	86.58	0.00e+00	863.00
IUUC-Tsy-119082	Tarsius syrichta	86.67	0.00e+00	737.00
IUUC-Tni-120419	Tetraodon nigroviridis	86.01	0.00e+00	842.00
IUUC-Tca-121294	Theobroma cacao	51.17	2.00e-134	472.00
IUUC-Tre-121962	Trichoderma reesei	46.02	8.00e-102	364.00
IUUC-Tvi-122280	Trichoderma virens	45.69	4.00e-109	388.00
IUUC-Tae-125873	Triticum aestivum	54.00	2.00e-134	472.00
IUUC-Tur-126551	Triticum urartu	54.00	5.00e-134	471.00
IUUC-Tme-126959	Tuber melanosporum	47.40	5.00e-113	401.00
IUUC-Tbe-127737	Tupaia belangeri	94.49	0.00e+00	950.00
IUUC-Ttr-129211	Tursiops truncatus	97.93	4.00e-172	597.00
IUUC-Uma-129591	Ustilago maydis	39.16	9.00e-96	344.00
IUUC-Vda-129674	Verticillium dahliae	44.30	3.00e-95	342.00
IUUC-Vpa-130793	Vicugna pacos	87.96	0.00e+00	880.00
IUUC-Xtr-132430	Xenopus tropicalis	90.10	0.00e+00	894.00
IUUC-Xma-133515	Xiphophorus maculatus	88.48	0.00e+00	853.00
IUUC-Yli-134488	Yarrowia lipolytica	38.19	3.00e-79	288.00
IUUC-Zma-134748	Zea mays	54.51	4.00e-136	478.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence