iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099230

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000342

Gene Name

POPTRDRAFT_560149; POPTR_0006s01170g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0006s01170	POPTR_0006s01170.1	POPTR_0006s01170.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	1.10e-42	147.6	223	556

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelw..kskkkavsprellkalkkeaee.fsgye 88
           +Gl+N+  t ++N ++Q+L+ +++lr+++l   +e+ +     + k +l++ + +l++++w   + k++vsp+e+l+a+ k++++ f+  +
   Q: 223  VGLNNIKETDFVNVTIQSLMRVTPLRNFFLI--PENYQ-----HCKSPLVQRFGELMRKIWhaRNFKGQVSPHEFLQAVMKVSKKrFRIGQ 306
           6******************************..55554.....45679*************999999************9999888***** PP
   S: 89   qqDaqEflaflldqleeelkk.eknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvp. 177
           q D  Ef+a+ll++l+ +l   +kn+++  e+ + + e  +e+++k  +++k+  +d    q  ++ + ++   + +++ +fl l l++p 
   Q: 307  QSDPVEFMAWLLNTLHANLRTsKKNNSIIYECFQGELEVIKESPNKAITEKKQNADDQSSDQRITDGVTKHDIFTETSRMQFLMLGLDLPp 397
           *******************544445555555555555666666666666665555555444444444444444444556689999999995 PP
   S: 178  .......gkeetkke......slqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvef 255
                  +     ++       l ++L++f               +  + + a+ k ++++lP++Lilh++Rf  ++++ + ek+ + v+f
   Q: 398  pplfkdvM-----EKniipqvPLFNILKKFDGDTVT---------EVVRPRVARMKYRVTRLPRYLILHMQRF--KKNNFFIEKNPTLVNF 472
           44432220.....22222223444444444433333.........344455599999****************..88899*********** PP
   S: 256  ple.Ldlspfctspeekqke..kkkYeLiavvvHsGslssGHYvayvknekgk.WllfdDskVtevkeeevleetgstaYvlfYkrr 338
           p + L+l+ f   p  k++e  + kY+Lia +vH G++++G Y ++v+ ++++ W+++ D +V+e+  + v     s+aYv +Y+++
   Q: 473  PVKnLELKDFIPLPMPKENErlRSKYDLIANIVHDGKPNEGFYRVFVQRKSEElWYEMQDLHVSETLPQMVAL---SEAYVQIYEQQ 556
           *999****998886666665569*************************988889*******************...********985 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MKNKREEDDM GSEVSGSVLK RQRVDEQSSA SGIGNPLVPY NDVDDEDEDF ERGKTNNGGG 60
VEESNTQVVA AENGEDEEEE EDVYGQGDSL ERRKSQFEPR EDCPYLDTVN RQVLDFDFEK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAAAACA AGAGGGAAGA AGATGATATG GGGAGTGAAG TAAGTGGTAG TGTTTTAAAG 60
AGGCAGAGAG TGGATGAACA GTCTTCAGCT TCTGGTATTG GAAACCCACT TGTGCCTTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001394--Peptidase_C19_UCH
IPR033809--USP39
IPR028889--USP_dom
IPR013083--Znf_RING/FYVE/PHD
IPR001607--Znf_UBP

PROSITE

PS50235--USP_3
PS50271--ZF_UBP

Pfam

PF00443--UCH
PF02148--zf-UBP

SMART

SM00290--ZnF_UBP

Gene Ontology

GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0008270--F:zinc ion binding
GO:0016579--P:protein deubiquitination
GO:0000245--P:spliceosomal complex assembly

KEGG

pop:POPTR_0006s01170g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000483	Aegilops tauschii	80.00	0.00e+00	746.00
IUUC-Aml-001846	Ailuropoda melanoleuca	51.34	2.00e-133	468.00
IUUC-Atr-002758	Amborella trichopoda	83.94	0.00e+00	790.00
IUUC-Apl-003336	Anas platyrhynchos	44.62	1.00e-62	233.00
IUUC-Aca-004846	Anolis carolinensis	51.20	1.00e-127	449.00
IUUC-Ago-007802	Ashbya gossypii	32.48	1.00e-53	203.00
IUUC-Acl-008304	Aspergillus clavatus	46.23	1.00e-92	333.00
IUUC-Afu-009100	Aspergillus fumigatus	45.05	7.00e-89	320.00
IUUC-Ani-009138	Aspergillus nidulans	46.12	6.00e-95	340.00
IUUC-Aor-010235	Aspergillus oryzae	43.03	1.00e-80	293.00
IUUC-Ate-010346	Aspergillus terreus	41.01	5.00e-70	258.00
IUUC-Ame-011688	Astyanax mexicanus	51.50	2.00e-133	468.00
IUUC-Bgr-011998	Blumeria graminis	45.57	1.00e-102	366.00
IUUC-Bta-013407	Bos taurus	51.34	6.00e-133	467.00
IUUC-Bci-013977	Botrytis cinerea	46.53	3.00e-104	371.00
IUUC-Bdi-014361	Brachypodium distachyon	82.07	0.00e+00	748.00
IUUC-Cja-019134	Callithrix jacchus	51.34	4.00e-133	468.00
IUUC-Cfa-020098	Canis familiaris	51.34	6.00e-133	467.00
IUUC-Cpo-021595	Cavia porcellus	51.34	9.00e-133	466.00
IUUC-Cre-022886	Chlamydomonas reinhardtii	61.29	8.00e-40	154.00
IUUC-Csa-024121	Chlorocebus sabaeus	51.34	7.00e-133	467.00
IUUC-Cho-025057	Choloepus hoffmanni	46.53	9.00e-48	183.00
IUUC-Cin-025473	Ciona intestinalis	53.55	2.00e-41	161.00
IUUC-Csv-025815	Ciona savignyi	60.08	4.00e-87	315.00
IUUC-Cgl-026416	Colletotrichum gloeosporioides	43.78	1.00e-102	366.00
IUUC-Dre-027870	Danio rerio	51.25	8.00e-134	469.00
IUUC-Dno-029655	Dasypus novemcinctus	51.34	6.00e-133	467.00
IUUC-Dor-030762	Dipodomys ordii	51.34	7.00e-133	466.00
IUUC-Dse-031441	Dothistroma septosporum	42.65	4.00e-97	348.00
IUUC-Dme-032101	Drosophila melanogaster	50.63	7.00e-131	459.00
IUUC-Ete-032841	Echinops telfairi	48.14	4.00e-123	434.00
IUUC-Eca-033463	Equus caballus	51.34	7.00e-133	466.00
IUUC-Eeu-034438	Erinaceus europaeus	47.16	8.00e-71	260.00
IUUC-Fca-035774	Felis catus	46.90	3.00e-133	468.00
IUUC-Fal-036988	Ficedula albicollis	51.56	5.00e-137	480.00
IUUC-Fox-037895	Fusarium oxysporum	45.84	4.00e-107	381.00
IUUC-Fso-038450	Fusarium solani	46.06	4.00e-107	381.00
IUUC-Gmo-038874	Gadus morhua	51.04	2.00e-131	462.00
IUUC-Ggr-040115	Gaeumannomyces graminis	41.48	2.00e-101	362.00
IUUC-Gac-041650	Gasterosteus aculeatus	51.13	1.00e-132	466.00
IUUC-Gma-043697	Glycine max	86.05	0.00e+00	822.00
IUUC-Ggo-044707	Gorilla gorilla	47.73	3.00e-118	418.00
IUUC-Hsa-046041	Homo sapiens	50.83	8.00e-133	466.00
IUUC-Hvu-047816	Hordeum vulgare	77.75	0.00e+00	716.00
IUUC-Itr-048945	Ictidomys tridecemlineatus	52.54	1.00e-95	342.00
IUUC-Lch-050419	Latimeria chalumnae	51.39	7.00e-135	473.00
IUUC-Lpe-051593	Leersia perrieri	81.02	0.00e+00	775.00
IUUC-Loc-052930	Lepisosteus oculatus	52.70	1.00e-135	476.00
IUUC-Lma-053256	Leptosphaeria maculans	46.23	2.00e-108	385.00
IUUC-Laf-053555	Loxodonta africana	51.04	2.00e-132	465.00
IUUC-Mcc-055630	Macaca mulatta	51.34	7.00e-133	467.00
IUUC-Meu-056579	Macropus eugenii	45.59	5.00e-67	248.00
IUUC-Mor-057078	Magnaporthe oryzae	45.76	7.00e-102	363.00
IUUC-Mpo-057607	Magnaporthe poae	37.01	7.00e-80	290.00
IUUC-Mla-059120	Melampsora laricipopulina	41.37	3.00e-97	348.00
IUUC-Mvi-060429	Microbotryum violaceum	54.73	4.00e-75	275.00
IUUC-Mmr-061313	Microcebus murinus	51.34	4.00e-133	467.00
IUUC-Mdo-062801	Monodelphis domestica	51.65	4.00e-134	471.00
IUUC-Mmu-064424	Mus musculus	51.34	6.00e-135	473.00
IUUC-Mac-064694	Musa acuminata	82.89	0.00e+00	765.00
IUUC-Mpu-065980	Mustela putorius furo	49.06	5.00e-109	387.00
IUUC-Mlu-067007	Myotis lucifugus	51.34	4.00e-133	467.00
IUUC-Nfi-068274	Neosartorya fischeri	45.52	1.00e-90	326.00
IUUC-Ncr-068829	Neurospora crassa	46.14	1.00e-106	380.00
IUUC-Nle-069171	Nomascus leucogenys	50.83	1.00e-132	466.00
IUUC-Opr-070494	Ochotona princeps	45.57	1.00e-108	386.00
IUUC-Ont-072290	Oreochromis niloticus	52.07	7.00e-138	483.00
IUUC-Oan-073099	Ornithorhynchus anatinus	52.17	5.00e-135	473.00
IUUC-Ocu-074642	Oryctolagus cuniculus	51.34	6.00e-133	467.00
IUUC-Oba-075886	Oryza barthii	80.73	0.00e+00	771.00
IUUC-Obr-076220	Oryza brachyantha	81.16	0.00e+00	774.00
IUUC-Ogl-077682	Oryza glaberrima	80.94	0.00e+00	774.00
IUUC-Ogu-078492	Oryza glumaepatula	81.37	0.00e+00	776.00
IUUC-Oin-079956	Oryza indica	80.94	0.00e+00	773.00
IUUC-Olo-080239	Oryza longistaminata	71.34	0.00e+00	653.00
IUUC-Ome-081573	Oryza meridionalis	81.16	0.00e+00	775.00
IUUC-Oni-082975	Oryza nivara	80.94	0.00e+00	773.00
IUUC-Opu-083724	Oryza punctata	81.37	0.00e+00	775.00
IUUC-Oru-084566	Oryza rufipogon	81.16	0.00e+00	775.00
IUUC-Osa-086008	Oryza sativa	81.16	0.00e+00	775.00
IUUC-Ola-086967	Oryzias latipes	52.81	8.00e-135	473.00
IUUC-Oga-088047	Otolemur garnettii	45.50	9.00e-78	283.00
IUUC-Oar-089393	Ovis aries	51.34	7.00e-133	467.00
IUUC-Ptr-090561	Pan troglodytes	50.83	9.00e-133	466.00
IUUC-Pan-091812	Papio anubis	51.34	7.00e-133	466.00
IUUC-Psi-093507	Pelodiscus sinensis	46.64	1.00e-64	239.00
IUUC-Pno-095104	Phaeosphaeria nodorum	45.45	2.00e-102	365.00
IUUC-Ppa-095995	Physcomitrella patens	78.37	0.00e+00	742.00
IUUC-Pfo-096754	Poecilia formosa	52.80	2.00e-136	478.00
IUUC-Pab-098053	Pongo abelii	50.83	9.00e-133	466.00
IUUC-Pca-100407	Procavia capensis	45.57	3.00e-108	384.00
IUUC-Ppe-101699	Prunus persica	86.60	0.00e+00	786.00
IUUC-Pva-103159	Pteropus vampyrus	45.49	8.00e-124	436.00
IUUC-Pgr-103433	Puccinia graminis	43.35	2.00e-102	366.00
IUUC-Ptt-103701	Puccinia triticina	39.84	5.00e-88	317.00
IUUC-Pte-104281	Pyrenophora teres	46.67	5.00e-107	380.00
IUUC-Pyt-104714	Pyrenophora triticirepentis	45.23	4.00e-107	381.00
IUUC-Rno-105531	Rattus norvegicus	50.83	3.00e-135	474.00
IUUC-Sha-107093	Sarcophilus harrisii	51.65	1.00e-133	469.00
IUUC-Sja-108004	Schizosaccharomyces japonicus	41.82	5.00e-106	377.00
IUUC-Ssl-108460	Sclerotinia sclerotiorum	43.63	2.00e-94	339.00
IUUC-Sit-110782	Setaria italica	82.29	0.00e+00	773.00
IUUC-Sly-111308	Solanum lycopersicum	73.46	0.00e+00	803.00
IUUC-Stu-112447	Solanum tuberosum	74.56	0.00e+00	805.00
IUUC-Sar-113352	Sorex araneus	49.61	7.00e-96	343.00
IUUC-Sbi-114806	Sorghum bicolor	82.68	0.00e+00	764.00
IUUC-Sre-115059	Sporisorium reilianum	39.11	6.00e-93	334.00
IUUC-Ssc-115677	Sus scrofa	52.26	3.00e-95	341.00
IUUC-Tru-118478	Takifugu rubripes	52.59	1.00e-135	476.00
IUUC-Tsy-119082	Tarsius syrichta	45.88	1.00e-86	313.00
IUUC-Tni-120419	Tetraodon nigroviridis	52.47	1.00e-132	466.00
IUUC-Tca-121294	Theobroma cacao	77.84	0.00e+00	833.00
IUUC-Tre-121962	Trichoderma reesei	47.77	2.00e-104	372.00
IUUC-Tvi-122280	Trichoderma virens	47.45	6.00e-103	367.00
IUUC-Tae-124442	Triticum aestivum	82.29	0.00e+00	775.00
IUUC-Tur-126551	Triticum urartu	82.07	0.00e+00	771.00
IUUC-Tme-126959	Tuber melanosporum	42.97	2.00e-99	356.00
IUUC-Tbe-127737	Tupaia belangeri	51.10	3.00e-126	444.00
IUUC-Ttr-129211	Tursiops truncatus	59.27	2.00e-87	316.00
IUUC-Uma-129591	Ustilago maydis	39.10	2.00e-91	329.00
IUUC-Vda-129674	Verticillium dahliae	44.44	5.00e-98	350.00
IUUC-Vpa-130793	Vicugna pacos	47.58	3.00e-115	408.00
IUUC-Xtr-132430	Xenopus tropicalis	50.63	8.00e-130	456.00
IUUC-Xma-133515	Xiphophorus maculatus	52.80	3.00e-136	478.00
IUUC-Zma-134748	Zea mays	82.14	0.00e+00	765.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence