iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ocu-074886

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AAGW02055373

Gene Name

RFWD3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSOCUG00000009152.2	ENSOCUT00000009152.2	ENSOCUP00000007899.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.40e-06	27.3	500	538

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvllk 37
           H   +++laf   + +ll+s+s D+t+k+ +l t+++++
   Q: 500  HGKQIRGLAFnpRSkGLLLSASLDNTVKLTSLETNTVVQ 538
           8889*******9446*************98888877766 PP

Organism

Oryctolagus cuniculus

Protein Sequence
(Fasta)

MAHETMEYSI QAQLDNPASE AVPEVISSQG GPLLLQPAPP IAVDVVSSQG TPSLFQPVPA 60
EVVNSHLVAP LFQPAPQVAT SLTEEVEPAR EASVNMNPGA SEEQGQRPGA VRTPRGASLE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTCATG AAACAATGGA ATATAGTATC CAAGCACAGT TAGATAATCC TGCTTCAGAA 60
GCTGTTCCTG AAGTCATCAG CAGCCAAGGA GGACCGCTTC TGCTCCAGCC TGCTCCTGTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0035861--C:site of double-strand break
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0031571--P:mitotic G1 DNA damage checkpoint
GO:2000001--P:regulation of DNA damage checkpoint
GO:0010212--P:response to ionizing radiation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000929	Aegilops tauschii	25.16	1.00e-17	84.70
IUUC-Aml-001188	Ailuropoda melanoleuca	73.75	0.00e+00	1078.00
IUUC-Atr-003034	Amborella trichopoda	26.71	2.00e-16	79.70
IUUC-Apl-003182	Anas platyrhynchos	68.85	0.00e+00	705.00
IUUC-Aca-004619	Anolis carolinensis	67.68	0.00e+00	728.00
IUUC-Aly-006391	Arabidopsis lyrata	30.67	1.00e-33	137.00
IUUC-Ath-007300	Arabidopsis thaliana	28.08	9.00e-32	131.00
IUUC-Ame-010890	Astyanax mexicanus	60.45	0.00e+00	637.00
IUUC-Bta-013051	Bos taurus	69.71	0.00e+00	1008.00
IUUC-Bdi-014519	Brachypodium distachyon	26.21	1.00e-18	88.20
IUUC-Bol-015271	Brassica oleracea	30.23	2.00e-32	134.00
IUUC-Bra-017931	Brassica rapa	29.90	4.00e-32	132.00
IUUC-Cja-019240	Callithrix jacchus	76.86	0.00e+00	1085.00
IUUC-Cfa-021010	Canis familiaris	75.16	0.00e+00	1083.00
IUUC-Cpo-022308	Cavia porcellus	70.87	0.00e+00	934.00
IUUC-Csa-023501	Chlorocebus sabaeus	76.34	0.00e+00	1150.00
IUUC-Cho-024900	Choloepus hoffmanni	65.21	0.00e+00	949.00
IUUC-Cin-025403	Ciona intestinalis	35.84	1.00e-93	337.00
IUUC-Csv-025819	Ciona savignyi	35.66	7.00e-41	160.00
IUUC-Cme-027123	Cyanidioschyzon merolae	32.85	6.00e-14	72.40
IUUC-Dre-028354	Danio rerio	56.73	4.00e-164	571.00
IUUC-Dno-029400	Dasypus novemcinctus	69.59	0.00e+00	1010.00
IUUC-Dor-030320	Dipodomys ordii	69.28	0.00e+00	816.00
IUUC-Dme-031949	Drosophila melanogaster	27.53	7.00e-45	175.00
IUUC-Ete-032691	Echinops telfairi	55.82	8.00e-138	484.00
IUUC-Eca-034320	Equus caballus	78.31	0.00e+00	1182.00
IUUC-Fca-035732	Felis catus	77.41	0.00e+00	1068.00
IUUC-Fal-036648	Ficedula albicollis	69.38	0.00e+00	714.00
IUUC-Gmo-038609	Gadus morhua	56.67	1.00e-138	486.00
IUUC-Gga-040522	Gallus gallus	68.53	6.00e-104	370.00
IUUC-Gac-042318	Gasterosteus aculeatus	54.46	1.00e-130	459.00
IUUC-Gma-043184	Glycine max	27.76	4.00e-27	116.00
IUUC-Ggo-044464	Gorilla gorilla	75.70	0.00e+00	1123.00
IUUC-Hsa-045991	Homo sapiens	75.45	0.00e+00	1116.00
IUUC-Hvu-047705	Hordeum vulgare	24.42	2.00e-25	110.00
IUUC-Itr-047977	Ictidomys tridecemlineatus	74.71	0.00e+00	1098.00
IUUC-Lch-050112	Latimeria chalumnae	65.61	0.00e+00	665.00
IUUC-Lpe-051605	Leersia perrieri	24.37	4.00e-17	82.80
IUUC-Loc-052241	Lepisosteus oculatus	63.41	0.00e+00	647.00
IUUC-Lma-053217	Leptosphaeria maculans	30.77	6.00e-07	47.40
IUUC-Laf-054559	Loxodonta africana	73.89	0.00e+00	929.00
IUUC-Mcc-055093	Macaca mulatta	75.96	0.00e+00	1126.00
IUUC-Meu-056417	Macropus eugenii	64.05	0.00e+00	667.00
IUUC-Mtr-058533	Medicago truncatula	27.01	2.00e-32	134.00
IUUC-Mga-059498	Meleagris gallopavo	59.00	0.00e+00	687.00
IUUC-Mmr-061782	Microcebus murinus	73.00	0.00e+00	1073.00
IUUC-Mdo-062053	Monodelphis domestica	57.99	0.00e+00	766.00
IUUC-Mmu-063352	Mus musculus	64.23	0.00e+00	958.00
IUUC-Mac-064582	Musa acuminata	26.28	2.00e-20	94.00
IUUC-Mpu-066087	Mustela putorius furo	72.73	0.00e+00	1083.00
IUUC-Mlu-068147	Myotis lucifugus	71.90	0.00e+00	994.00
IUUC-Nle-069503	Nomascus leucogenys	71.87	0.00e+00	1048.00
IUUC-Opr-070479	Ochotona princeps	73.24	0.00e+00	1064.00
IUUC-Ont-071700	Oreochromis niloticus	56.41	3.00e-168	585.00
IUUC-Oan-073702	Ornithorhynchus anatinus	72.47	0.00e+00	771.00
IUUC-Oba-075729	Oryza barthii	26.49	2.00e-20	94.00
IUUC-Obr-076562	Oryza brachyantha	25.81	8.00e-21	95.10
IUUC-Ogl-077615	Oryza glaberrima	26.49	2.00e-20	94.00
IUUC-Ogu-078921	Oryza glumaepatula	26.82	4.00e-22	99.80
IUUC-Oin-079250	Oryza indica	24.60	3.00e-17	83.60
IUUC-Olo-080758	Oryza longistaminata	27.55	2.00e-22	100.00
IUUC-Ome-081707	Oryza meridionalis	24.92	7.00e-19	88.60
IUUC-Oni-083006	Oryza nivara	26.82	8.00e-22	98.60
IUUC-Opu-083650	Oryza punctata	27.33	6.00e-21	95.90
IUUC-Oru-084924	Oryza rufipogon	26.60	2.00e-22	100.00
IUUC-Osa-085820	Oryza sativa	26.82	8.00e-22	98.60
IUUC-Ola-087229	Oryzias latipes	54.40	6.00e-135	473.00
IUUC-Oga-088243	Otolemur garnettii	70.88	0.00e+00	1013.00
IUUC-Oar-089461	Ovis aries	71.78	0.00e+00	1084.00
IUUC-Ptr-090527	Pan troglodytes	75.70	0.00e+00	1113.00
IUUC-Pan-092431	Papio anubis	75.65	0.00e+00	1057.00
IUUC-Psi-093156	Pelodiscus sinensis	70.12	0.00e+00	751.00
IUUC-Pno-094897	Phaeosphaeria nodorum	26.21	4.00e-08	52.00
IUUC-Ppa-095305	Physcomitrella patens	37.01	1.00e-20	95.10
IUUC-Pfo-097065	Poecilia formosa	55.95	2.00e-164	572.00
IUUC-Pab-098272	Pongo abelii	75.70	0.00e+00	1135.00
IUUC-Pop-099827	Populus trichocarpa	29.81	8.00e-31	128.00
IUUC-Pca-100713	Procavia capensis	64.83	0.00e+00	872.00
IUUC-Ppe-102103	Prunus persica	26.54	1.00e-33	137.00
IUUC-Pva-103133	Pteropus vampyrus	83.78	0.00e+00	738.00
IUUC-Pte-104191	Pyrenophora teres	48.00	9.00e-08	50.80
IUUC-Pyt-104734	Pyrenophora triticirepentis	46.00	2.00e-07	50.10
IUUC-Sha-107628	Sarcophilus harrisii	58.57	0.00e+00	774.00
IUUC-Sit-109781	Setaria italica	27.33	3.00e-23	103.00
IUUC-Sly-111779	Solanum lycopersicum	28.73	3.00e-33	136.00
IUUC-Stu-112817	Solanum tuberosum	43.90	5.00e-20	91.30
IUUC-Sar-113124	Sorex araneus	63.64	0.00e+00	665.00
IUUC-Sbi-114107	Sorghum bicolor	25.24	9.00e-28	118.00
IUUC-Sre-115057	Sporisorium reilianum	35.06	2.00e-06	47.40
IUUC-Ssc-115850	Sus scrofa	73.79	0.00e+00	1079.00
IUUC-Tgu-117295	Taeniopygia guttata	70.18	0.00e+00	731.00
IUUC-Tru-117539	Takifugu rubripes	56.47	2.00e-167	582.00
IUUC-Tsy-118805	Tarsius syrichta	66.78	2.00e-106	380.00
IUUC-Tni-120274	Tetraodon nigroviridis	56.32	6.00e-166	577.00
IUUC-Tca-121162	Theobroma cacao	31.91	2.00e-32	134.00
IUUC-Tae-124822	Triticum aestivum	24.77	4.00e-26	112.00
IUUC-Tur-126162	Triticum urartu	28.12	2.00e-17	84.30
IUUC-Tbe-127884	Tupaia belangeri	69.16	7.00e-82	298.00
IUUC-Ttr-128665	Tursiops truncatus	67.62	2.00e-141	496.00
IUUC-Uma-129349	Ustilago maydis	35.90	6.00e-07	49.30
IUUC-Vpa-130385	Vicugna pacos	76.03	0.00e+00	1074.00
IUUC-Vvi-131464	Vitis vinifera	30.46	2.00e-27	117.00
IUUC-Xtr-132015	Xenopus tropicalis	66.21	0.00e+00	707.00
IUUC-Xma-133109	Xiphophorus maculatus	57.52	2.00e-164	572.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence