iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.60e-31	109.0	243	315

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +pe+flCpIslelM+dP ++++G+ty+rs I++w++ g+ +cP+t+q+l++ +l+Pn++lr+li++wc ++++
   Q: 243  IPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNYVLRSLISQWCTKHNI 315
           8********************************************************************9986 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA 60
SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG AAKRISFQFQ CVTWKLEKAL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAAAAAACCA TTTTTAGAGT TAGATAAAAA GTTTAAAACA AAAAACACTA AAACCAAAAC 60
GGTGTCGTAA CAGCGACTTA TCCTTTTTCG CCACATGGCT TCGTTGGATA CATAAAAGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0043621--F:protein self-association
GO:0004842--F:ubiquitin-protein transferase activity
GO:0051865--P:protein autoubiquitination
GO:0031648--P:protein destabilization
GO:0016567--P:protein ubiquitination
GO:2000022--P:regulation of jasmonic acid mediated signaling pathway

KEGG

ath:AT1G71020

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000977	Aegilops tauschii	54.60	6.00e-151	526.00
IUUC-Aly-005733	Arabidopsis lyrata	91.91	0.00e+00	1067.00
IUUC-Acl-008113	Aspergillus clavatus	30.19	2.00e-17	83.20
IUUC-Ate-010256	Aspergillus terreus	30.66	3.00e-18	85.90
IUUC-Bdi-014341	Brachypodium distachyon	51.43	6.00e-162	563.00
IUUC-Bol-015190	Brassica oleracea	81.33	0.00e+00	941.00
IUUC-Bra-017246	Brassica rapa	80.45	0.00e+00	923.00
IUUC-Gma-043730	Glycine max	63.73	0.00e+00	705.00
IUUC-Hvu-047676	Hordeum vulgare	65.17	2.00e-125	441.00
IUUC-Mtr-058156	Medicago truncatula	63.78	0.00e+00	686.00
IUUC-Mac-065650	Musa acuminata	50.99	3.00e-154	538.00
IUUC-Obr-076820	Oryza brachyantha	66.24	4.00e-144	503.00
IUUC-Ppe-101146	Prunus persica	63.55	0.00e+00	689.00
IUUC-Sly-111534	Solanum lycopersicum	58.47	0.00e+00	645.00
IUUC-Stu-112138	Solanum tuberosum	58.92	0.00e+00	653.00
IUUC-Sbi-114533	Sorghum bicolor	53.85	2.00e-154	538.00
IUUC-Tca-121496	Theobroma cacao	67.39	0.00e+00	761.00
IUUC-Tae-125272	Triticum aestivum	54.38	2.00e-148	518.00
IUUC-Vvi-131185	Vitis vinifera	64.27	0.00e+00	741.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence