iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
Mentha
Post-translational Modifications (PTMs)
dbPPT	UniProt
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
UBD/Alpha-Helix/UIM	UIM	11406394

Classification

Family	E-value	Score	Start	End
UBD/Alpha-Helix/UIM	0.00039	21.1	232	249
ULD/UDP/UFD/UBX	1.00e-06	30.1	388	460

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UIM

   S: 2    EdeeLqlAlalSlqEeee 19
           Ede++++A+ +Sl+ ee+
   Q: 232  EDEDIARAISMSLEMEEH 249
           9*************9985 PP

ULD/UDP/UFD/UBX

   S: 3    teqatlqiRlpdGkrlvrkFpssttleqiyqfveyllvessdpFeLvspfPrrtlkpeehmstlqeagLvpsg 75
           +++ tl +R+pd +r  r+F +s++l+ +++f++ +   +  ++  v+p+Prr ++ ++   t +e+ L+++ 
   Q: 388  EDAITLLVRMPDSSRHGRRFLKSDKLKYLFDFIDAAGLVKPGTYRVVRPYPRRAFSIQDGALTFEELSLTNKQ 460
           5678999***************************999999999**************************9974 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MVSPTRDAIQ SYMSITGASE SLAIQRLEEH GNNLPEAINA HFRDVERSIY DDSSLDTRSD 60
YNVVEDNNHV RGSETRPVNE SRPVPGALPS ILSAARAFRP SLLLDPNYRR NILRQLSGSA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTAAAATTAA ATAGTGATTA CGTCACCGTT GTGGCGACTC ATCACCGTCG GTTCGAATCA 60
GTTGAACTAA TCTTAGAAGT GAGAACACCG TTGCTTCCAT AATTCCCGGT GAATCATTTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0833--Ubl conjugation pathway

Interpro

IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR001012--UBX_dom
IPR003903--UIM_dom

PROSITE

PS50033--UBX
PS50330--UIM

Pfam

PF00789--UBX
PF02809--UIM

SMART

SM00166--UBX
SM00726--UIM

KEGG

ath:AT4G00752

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006407	Arabidopsis lyrata	91.04	0.00e+00	816.00
IUUC-Bci-013928	Botrytis cinerea	31.25	1.30e-02	34.70
IUUC-Bol-015655	Brassica oleracea	76.73	5.00e-179	619.00
IUUC-Bra-017914	Brassica rapa	76.20	3.00e-179	620.00
IUUC-Cre-022586	Chlamydomonas reinhardtii	28.41	1.00e-05	43.50
IUUC-Itr-048434	Ictidomys tridecemlineatus	40.74	2.40e-01	30.40
IUUC-Mvi-060313	Microbotryum violaceum	35.71	7.70e-02	30.80
IUUC-Pma-094190	Petromyzon marinus	39.19	4.00e-06	42.70
IUUC-Pop-099719	Populus trichocarpa	38.68	4.00e-73	268.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence