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Tag Content
UUCD2 ID IUUC-Gga-040623
UUCD1 version UUC-GaG-00792
Ensembl Protein ID ENSGALP00000009354.2
UniProt Accession Q9PTR5; LIS1_CHICK
Genbank Protein ID AAF18938.1
Protein Name Lissencephaly-1 homolog
Genbank Nucleotide ID AF113946
Gene Name PAFAH1B1; LIS1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSGALG00000005834.4 ENSGALT00000009368.3 ENSGALP00000009354.2
ENSGALG00000005834.4 ENSGALT00000052783.1 ENSGALP00000052419.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.40e-59 195.0 190 229
UBD/Beta-Prp 5.10e-95 318.5 107 410
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH   v+++a  ++ +++vs+s+D+tik+W++ tg ++k+
   Q: 190  GHDHNVSSVAImPNgDHIVSASRDKTIKMWEVQTGYCVKT 229
           899*******99777********************99875 PP
   

   UBD/Beta-Prp
   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsv 97
           h s++t v f+p  s+++++s+d+tikvwd++tg++ r+l+gh++ v++++f+++gk+l+++s D+tik+wd++ ++c++t++gh+++v
   Q: 107  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNV 195
           5668888********************************************************************************** PP
   S: 98   lslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvysl 186
            s++++p+gd++vs+s+d+ti++w+++tg+c++ t++gh+++v++v+ ++dg l++s+s+D+tvr+W ++t+++  +l++ h++ v+++
   Q: 196  SSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE-HEHVVECI 282
           *********************************.*********************************************9.******** PP
   S: 187  sfdsng....................kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgd 255
           s+ +++                    ++l+sgs+d+t+k+wd++tg c++tl gh+++v+ v f++ +++++s+++D+++r+Wd +++ 
   Q: 283  SWAPESsystiseatgsetkksgkpgPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDFKNKR 371
           ***************************************************************************************** PP
   S: 256  llktlqlhnssvisvavlsfgdnvlvlgsedskvniwklk 295
           ++ktl+ h++ v+s ++ + + +++v+gs d++v++w+++
   Q: 372  CMKTLNAHEHFVTSLDF-HKTAPYVVTGSVDQTVKVWECR 410
           *****************.99*****************985 PP
   
Organism Gallus gallus
Functional Description
(View)

Functional Description


     Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration.
 Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes such as the maintenance of Golgi integrity, the peripheral transport of microtubule fragments and the coupling of the nucleus and centrosome. May be required for proliferation of neuronal precursors and neuronal migration.
Protein Sequence
(Fasta)
MVLSQRQRDE LNRAIADYLR SNGYEEAYSV FKKEAELDVN EELDKKYAGL LEKKWTSVIR 60
LQKKVMELES KLNEAKEEFT SGGPLGQKRD PKEWIPRPPE KYALSGHRSP VTRVIFHPVF 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Gga-040623|E3,WD_repeat;UBD,Beta-Prp|Gallus gallus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GCCGCTCCCT CCCTCCCTCC TGGCGGCCGG GGCGCCACTG ACAGAGCGCG GAGCGGAGCA 60
GCGCCCAGCG CCTCCGGGAC CCCCGCACCC CGCCGCGTCT GTGGATGGGA GAGGCGGGCG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Gga-040623|E3,WD_repeat;UBD,Beta-Prp|Gallus gallus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0131--Cell cycle
KW-0132--Cell division
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0217--Developmental protein
KW-0221--Differentiation
KW-0493--Microtubule
KW-0498--Mitosis
KW-0524--Neurogenesis
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR017252--Dynein_regulator_LIS1
IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08513--LisH
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00667--LisH
SM00320--WD40
Gene Ontology

GO:0000235--C:astral microtubule
GO:1904115--C:axon cytoplasm
GO:0005938--C:cell cortex
GO:0031252--C:cell leading edge
GO:0005813--C:centrosome
GO:0070062--C:extracellular exosome
GO:0000776--C:kinetochore
GO:0005874--C:microtubule
GO:0005875--C:microtubule associated complex
GO:0031514--C:motile cilium
GO:0005635--C:nuclear envelope
GO:0048471--C:perinuclear region of cytoplasm
GO:0032420--C:stereocilium
GO:0008017--F:microtubule binding
GO:0001675--P:acrosome assembly
GO:0030036--P:actin cytoskeleton organization
GO:0008344--P:adult locomotory behavior
GO:0001667--P:ameboidal-type cell migration
GO:0060117--P:auditory receptor cell development
GO:0048854--P:brain morphogenesis
GO:0051301--P:cell division
GO:0007268--P:chemical synaptic transmission
GO:0090102--P:cochlea development
GO:0021540--P:corpus callosum morphogenesis
GO:0043622--P:cortical microtubule organization
GO:0000132--P:establishment of mitotic spindle orientation
GO:0042249--P:establishment of planar polarity of embryonic epithelium
GO:0007281--P:germ cell development
GO:0021766--P:hippocampus development
GO:0021819--P:layer formation in cerebral cortex
GO:0007611--P:learning or memory
GO:0051661--P:maintenance of centrosome location
GO:0090176--P:microtubule cytoskeleton organization involved in establishment of planar polarity
GO:0031023--P:microtubule organizing center organization
GO:0007067--P:mitotic nuclear division
GO:0046329--P:negative regulation of JNK cascade
GO:0007405--P:neuroblast proliferation
GO:0022008--P:neurogenesis
GO:0050885--P:neuromuscular process controlling balance
GO:0001764--P:neuron migration
GO:0051081--P:nuclear envelope disassembly
GO:0007097--P:nuclear migration
GO:0036035--P:osteoclast development
GO:0001961--P:positive regulation of cytokine-mediated signaling pathway
GO:0061003--P:positive regulation of dendritic spine morphogenesis
GO:0040019--P:positive regulation of embryonic development
GO:0009306--P:protein secretion
GO:0043087--P:regulation of GTPase activity
GO:0070507--P:regulation of microtubule cytoskeleton organization
GO:2000574--P:regulation of microtubule motor activity
GO:0008090--P:retrograde axonal transport
GO:0019226--P:transmission of nerve impulse
GO:0047496--P:vesicle transport along microtubule
KEGG gga:374224
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001589 Ailuropoda melanoleuca 98.75 0.00e+00 828.00
IUUC-Apl-004024 Anas platyrhynchos 100.00 0.00e+00 855.00
IUUC-Aca-004564 Anolis carolinensis 98.78 0.00e+00 845.00
IUUC-Ago-007862 Ashbya gossypii 27.46 7.00e-39 154.00
IUUC-Acl-008360 Aspergillus clavatus 46.53 9.00e-105 373.00
IUUC-Afl-008502 Aspergillus flavus 46.21 1.00e-94 339.00
IUUC-Afu-008848 Aspergillus fumigatus 47.19 1.00e-106 380.00
IUUC-Ani-009173 Aspergillus nidulans 42.54 2.00e-90 325.00
IUUC-Ang-009873 Aspergillus niger 44.84 1.00e-94 339.00
IUUC-Aor-009973 Aspergillus oryzae 43.94 3.00e-92 332.00
IUUC-Ate-010523 Aspergillus terreus 42.11 1.00e-90 326.00
IUUC-Ame-010969 Astyanax mexicanus 94.63 0.00e+00 821.00
IUUC-Bgr-011972 Blumeria graminis 47.49 2.00e-105 375.00
IUUC-Bta-013106 Bos taurus 98.78 0.00e+00 850.00
IUUC-Bci-013615 Botrytis cinerea 44.58 8.00e-99 353.00
IUUC-Cel-018459 Caenorhabditis elegans 57.66 8.00e-149 519.00
IUUC-Cja-018755 Callithrix jacchus 96.34 0.00e+00 831.00
IUUC-Cfa-020749 Canis familiaris 98.78 0.00e+00 850.00
IUUC-Cpo-022371 Cavia porcellus 98.78 0.00e+00 850.00
IUUC-Cre-022578 Chlamydomonas reinhardtii 35.44 5.00e-50 191.00
IUUC-Csa-023524 Chlorocebus sabaeus 98.26 0.00e+00 717.00
IUUC-Cho-024764 Choloepus hoffmanni 88.68 0.00e+00 676.00
IUUC-Cin-025753 Ciona intestinalis 71.05 0.00e+00 625.00
IUUC-Csv-025817 Ciona savignyi 69.51 0.00e+00 634.00
IUUC-Cgl-026529 Colletotrichum gloeosporioides 46.81 6.00e-98 350.00
IUUC-Cne-027087 Cryptococcus neoformans 50.39 4.00e-110 391.00
IUUC-Dre-028314 Danio rerio 94.15 0.00e+00 818.00
IUUC-Dno-029050 Dasypus novemcinctus 99.02 0.00e+00 851.00
IUUC-Dor-030222 Dipodomys ordii 90.73 0.00e+00 767.00
IUUC-Dse-031164 Dothistroma septosporum 43.58 9.00e-102 363.00
IUUC-Dme-031745 Drosophila melanogaster 69.83 8.00e-172 596.00
IUUC-Ete-032508 Echinops telfairi 81.95 0.00e+00 683.00
IUUC-Eca-034288 Equus caballus 98.25 0.00e+00 824.00
IUUC-Eeu-034984 Erinaceus europaeus 90.49 0.00e+00 764.00
IUUC-Fca-036498 Felis catus 98.78 0.00e+00 850.00
IUUC-Fal-036920 Ficedula albicollis 100.00 0.00e+00 855.00
IUUC-Fox-037996 Fusarium oxysporum 46.41 9.00e-105 373.00
IUUC-Fso-038160 Fusarium solani 44.21 2.00e-99 356.00
IUUC-Gmo-038983 Gadus morhua 93.17 0.00e+00 808.00
IUUC-Ggr-040051 Gaeumannomyces graminis 45.11 3.00e-98 352.00
IUUC-Gac-041613 Gasterosteus aculeatus 92.93 0.00e+00 807.00
IUUC-Ggo-045410 Gorilla gorilla 87.97 0.00e+00 719.00
IUUC-Hsa-046358 Homo sapiens 99.02 0.00e+00 852.00
IUUC-Itr-047890 Ictidomys tridecemlineatus 98.78 0.00e+00 850.00
IUUC-Kpa-049351 Komagataella pastoris 29.30 2.00e-43 169.00
IUUC-Lch-049936 Latimeria chalumnae 96.59 0.00e+00 830.00
IUUC-Loc-052476 Lepisosteus oculatus 95.74 0.00e+00 803.00
IUUC-Lma-053170 Leptosphaeria maculans 46.67 4.00e-101 361.00
IUUC-Laf-053713 Loxodonta africana 97.31 0.00e+00 834.00
IUUC-Mcc-054628 Macaca mulatta 98.29 0.00e+00 848.00
IUUC-Meu-055927 Macropus eugenii 84.84 5.00e-139 486.00
IUUC-Mor-056962 Magnaporthe oryzae 45.08 2.00e-98 352.00
IUUC-Mpo-057583 Magnaporthe poae 45.05 3.00e-94 338.00
IUUC-Mla-058819 Melampsora laricipopulina 48.31 8.00e-119 420.00
IUUC-Mga-059945 Meleagris gallopavo 99.76 0.00e+00 855.00
IUUC-Mvi-060403 Microbotryum violaceum 50.11 5.00e-129 454.00
IUUC-Mmr-061289 Microcebus murinus 98.75 0.00e+00 828.00
IUUC-Mdo-061912 Monodelphis domestica 98.05 0.00e+00 844.00
IUUC-Mmu-063253 Mus musculus 98.78 0.00e+00 850.00
IUUC-Mpu-066638 Mustela putorius furo 98.78 0.00e+00 850.00
IUUC-Mlu-067267 Myotis lucifugus 97.06 0.00e+00 833.00
IUUC-Nfi-068571 Neosartorya fischeri 45.57 5.00e-99 354.00
IUUC-Ncr-068895 Neurospora crassa 48.41 1.00e-105 376.00
IUUC-Nle-069087 Nomascus leucogenys 98.51 0.00e+00 693.00
IUUC-Opr-070579 Ochotona princeps 99.02 0.00e+00 851.00
IUUC-Ont-072432 Oreochromis niloticus 94.63 0.00e+00 821.00
IUUC-Oan-073072 Ornithorhynchus anatinus 98.78 0.00e+00 850.00
IUUC-Ocu-074180 Oryctolagus cuniculus 99.02 0.00e+00 851.00
IUUC-Ola-086772 Oryzias latipes 94.15 0.00e+00 812.00
IUUC-Oga-088219 Otolemur garnettii 96.58 0.00e+00 830.00
IUUC-Oar-090394 Ovis aries 98.78 0.00e+00 850.00
IUUC-Ptr-091517 Pan troglodytes 98.78 0.00e+00 850.00
IUUC-Pan-092421 Papio anubis 98.29 0.00e+00 848.00
IUUC-Psi-093370 Pelodiscus sinensis 99.27 0.00e+00 852.00
IUUC-Pma-094319 Petromyzon marinus 88.54 0.00e+00 641.00
IUUC-Pno-094815 Phaeosphaeria nodorum 47.26 1.00e-104 373.00
IUUC-Pfo-097089 Poecilia formosa 93.66 0.00e+00 813.00
IUUC-Pab-098421 Pongo abelii 98.78 0.00e+00 850.00
IUUC-Pca-100120 Procavia capensis 72.03 4.00e-163 566.00
IUUC-Pva-102960 Pteropus vampyrus 98.54 0.00e+00 847.00
IUUC-Pgr-103538 Puccinia graminis 47.43 3.00e-118 418.00
IUUC-Ptt-103990 Puccinia triticina 42.46 1.00e-44 174.00
IUUC-Pte-104261 Pyrenophora teres 47.49 8.00e-105 373.00
IUUC-Pyt-104780 Pyrenophora triticirepentis 47.73 4.00e-105 374.00
IUUC-Rno-105123 Rattus norvegicus 98.78 0.00e+00 850.00
IUUC-Sce-106208 Saccharomyces cerevisiae 27.72 2.00e-36 146.00
IUUC-Sha-107010 Sarcophilus harrisii 97.80 0.00e+00 842.00
IUUC-Sja-107899 Schizosaccharomyces japonicus 32.57 5.00e-65 241.00
IUUC-Ssl-108571 Sclerotinia sclerotiorum 44.71 2.00e-99 355.00
IUUC-Sar-113309 Sorex araneus 97.99 0.00e+00 819.00
IUUC-Sre-115003 Sporisorium reilianum 50.00 2.00e-125 442.00
IUUC-Ssc-116148 Sus scrofa 98.78 0.00e+00 850.00
IUUC-Tgu-117299 Taeniopygia guttata 99.76 0.00e+00 852.00
IUUC-Tru-118179 Takifugu rubripes 91.95 0.00e+00 806.00
IUUC-Tsy-119493 Tarsius syrichta 97.32 0.00e+00 834.00
IUUC-Tni-120355 Tetraodon nigroviridis 93.17 0.00e+00 781.00
IUUC-Tre-121977 Trichoderma reesei 43.86 1.00e-101 363.00
IUUC-Tvi-122661 Trichoderma virens 44.06 2.00e-100 358.00
IUUC-Tme-127031 Tuber melanosporum 49.38 9.00e-104 370.00
IUUC-Tbe-127492 Tupaia belangeri 81.54 1.00e-114 406.00
IUUC-Ttr-128929 Tursiops truncatus 98.78 0.00e+00 848.00
IUUC-Uma-129347 Ustilago maydis 47.72 3.00e-122 431.00
IUUC-Vda-129837 Verticillium dahliae 45.69 1.00e-99 356.00
IUUC-Vpa-130532 Vicugna pacos 84.46 0.00e+00 660.00
IUUC-Xtr-131985 Xenopus tropicalis 97.32 0.00e+00 840.00
IUUC-Xma-133314 Xiphophorus maculatus 94.15 0.00e+00 816.00
IUUC-Yli-134403 Yarrowia lipolytica 38.79 2.00e-74 272.00
Created Date 25-Jun-2017

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