iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ptr-091264

Ensembl Protein ID

ENSPTRP00000012853.5

UniProt Accession

H2QA66; H2QA66_PANTR

Genbank Protein ID

JAA08235.1; JAA12448.1; JAA30927.1

Protein Name

Small nuclear ribonucleoprotein 25kDa (U11/U12)

Genbank Nucleotide ID

AACZ03105922; GABF01009697; GABD01002173

Gene Name

SNRNP25

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPTRG00000007526.5	ENSPTRT00000013875.5	ENSPTRP00000012853.5

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	1.70e-06	27.8	41	122

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 1    vqvtvksldgseltlkvnpsdtVaeLKeki..............ekk.lgippeqqrLiykGkiL.eddktLadyglkdgst 66
           ++v+v  +dg ++++ v  s+tV++LK+ i              ++  +++ ++  +L+ +G+ L ed k+L dyg+++++ 
   Q: 41   MTVRVCKMDGEVMPVVVVQSATVLDLKKAIqryvqlkqereggiQHIsWSYVWRTYHLTSAGEKLtEDRKKLRDYGIRNRDE 122
           67888899******************************9999996667999999899999999999***********99876 PP

Organism

Pan troglodytes

Protein Sequence
(Fasta)

MDVFQEGLAM VVQDPLLCDL PIQVTLEEVN SQIALEYGQA MTVRVCKMDG EVMPVVVVQS 60
ATVLDLKKAI QRYVQLKQER EGGIQHISWS YVWRTYHLTS AGEKLTEDRK KLRDYGIRNR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCACGATGAG AGATCGTCCA GGAGGCGGTG TTGATGCGGC AAAGGGCGAC AGGAAGCGCA 60
TTAGGACTTG AAATCGGAGA CGCACGCAGG GGAGGGGGTC AGTGTCGGAA CCTGGTAGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0543--Viral nucleoprotein
KW-0946--Virion

Interpro

IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50053--UBIQUITIN_2

Gene Ontology

GO:0005829--C:cytosol
GO:0045171--C:intercellular bridge
GO:0005654--C:nucleoplasm
GO:0005689--C:U12-type spliceosomal complex
GO:0019013--C:viral nucleocapsid

KEGG

ptr:467847

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Bta-013418	Bos taurus	98.37	1.00e-68	250.00
IUUC-Bci-013773	Botrytis cinerea	41.94	4.60e-02	31.60
IUUC-Cja-019542	Callithrix jacchus	99.24	2.00e-74	270.00
IUUC-Cpo-021791	Cavia porcellus	97.73	8.00e-74	268.00
IUUC-Cin-025440	Ciona intestinalis	58.33	7.00e-42	162.00
IUUC-Dre-028229	Danio rerio	78.79	3.00e-63	233.00
IUUC-Eca-033616	Equus caballus	97.73	1.00e-73	268.00
IUUC-Gac-041795	Gasterosteus aculeatus	75.00	5.00e-59	219.00
IUUC-Ggo-045439	Gorilla gorilla	100.00	9.00e-75	271.00
IUUC-Hsa-045948	Homo sapiens	100.00	6.00e-75	271.00
IUUC-Itr-048331	Ictidomys tridecemlineatus	96.97	3.00e-73	267.00
IUUC-Lch-050068	Latimeria chalumnae	82.17	2.00e-61	227.00
IUUC-Mcc-054809	Macaca mulatta	99.24	2.00e-74	270.00
IUUC-Mmu-063172	Mus musculus	98.37	9.00e-69	251.00
IUUC-Mac-065187	Musa acuminata	35.16	3.00e-09	55.10
IUUC-Ocu-074308	Oryctolagus cuniculus	96.97	6.00e-73	265.00
IUUC-Oga-089042	Otolemur garnettii	97.73	7.00e-74	268.00
IUUC-Oar-089400	Ovis aries	96.97	4.00e-73	265.00
IUUC-Pan-092931	Papio anubis	99.24	2.00e-74	270.00
IUUC-Pfo-097322	Poecilia formosa	75.76	6.00e-59	219.00
IUUC-Pab-098273	Pongo abelii	100.00	6.00e-75	271.00
IUUC-Rno-105525	Rattus norvegicus	98.37	9.00e-69	251.00
IUUC-Ssl-108605	Sclerotinia sclerotiorum	45.16	8.00e-03	34.30
IUUC-Sly-110960	Solanum lycopersicum	32.18	5.00e-10	57.80
IUUC-Stu-112094	Solanum tuberosum	29.21	5.00e-08	51.20
IUUC-Ssc-115263	Sus scrofa	95.12	9.00e-67	244.00
IUUC-Tru-117994	Takifugu rubripes	75.00	7.00e-58	216.00
IUUC-Tni-120742	Tetraodon nigroviridis	76.52	1.00e-59	222.00
IUUC-Xtr-132218	Xenopus tropicalis	81.06	4.00e-64	236.00
IUUC-Xma-133570	Xiphophorus maculatus	75.00	1.00e-58	218.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence