iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Mtr-057706

Ensembl Protein ID

AES63731

UniProt Accession

G7ILH1; A0A0C3UX92; G7ILH1_MEDTR

Genbank Protein ID

AES63731.2

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

CM001218

Gene Name

MTR_2g012630

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
MTR_2g012630	AES63731	AES63731

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-34	118.1	140	178
UBD/Beta-Prp	6.90e-57	194.3	5	141

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+ +++ ++f +d + +vsG+ D+++kvWDl+ g+ll+
   Q: 140  GHSQGISTIKFtPDgRWVVSGGFDNVVKVWDLTAGKLLH 178
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 126  gqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnv 225
           g++++  +  h++ vnc+++ +++ +l+v+G++D +v+lW +   + l  l+g ht++v+s++fds    +++gs+ g ++lwdl+++++vrt+ gh++n 
   Q: 5    GYKIQ-EFVAHSSNVNCLNIGKKAcRLFVTGGDDHKVNLWTIGKPTSLSSLSG-HTSPVESVTFDSGEVLVLAGSTSGVIRLWDLEESKMVRTVAGHRSNC 103
           66777.7889******************************************9.*********************************************** PP
   S: 226  ksvrfspnderlvsgssDgsiriWdlrsgdllktlqlh 263
           +sv+f+p +e+++sgs+D  ++iWd r++ +++t+++h
   Q: 104  TSVEFHPFGEFFASGSMDTNLKIWDNRKKGCIHTYKGH 141
           ***********************************998 PP

Organism

Medicago truncatula

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MAKRGYKIQE FVAHSSNVNC LNIGKKACRL FVTGGDDHKV NLWTIGKPTS LSSLSGHTSP 60
VESVTFDSGE VLVLAGSTSG VIRLWDLEES KMVRTVAGHR SNCTSVEFHP FGEFFASGSM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTTTAAATC AATATTATAA AATATTTTTC AGACAATTTT TCATTCTGAC ATATACAATC 60
CAATTCCTAA CTTCTGCTTC GGATTTCATC TTTTTCCATT CACCTAACAA AACAAAACTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

mtr:MTR_2g012630

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005897	Arabidopsis lyrata	58.80	2.00e-173	602.00
IUUC-Ath-006624	Arabidopsis thaliana	59.96	6.00e-177	614.00
IUUC-Bol-015355	Brassica oleracea	43.61	0.00e+00	774.00
IUUC-Bra-017265	Brassica rapa	64.54	2.00e-173	602.00
IUUC-Eeu-034740	Erinaceus europaeus	29.54	5.00e-32	130.00
IUUC-Gma-043341	Glycine max	78.40	0.00e+00	1042.00
IUUC-Obr-076138	Oryza brachyantha	47.83	4.00e-151	528.00
IUUC-Pop-100006	Populus trichocarpa	65.07	0.00e+00	788.00
IUUC-Ppe-101697	Prunus persica	65.77	0.00e+00	736.00
IUUC-Sly-111901	Solanum lycopersicum	54.19	0.00e+00	653.00
IUUC-Tca-121590	Theobroma cacao	62.94	0.00e+00	752.00
IUUC-Tae-125438	Triticum aestivum	47.83	7.00e-148	517.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence