iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ogu-078062

Ensembl Protein ID

OGLUM01G37310.1

UniProt Accession

A0A0D9YFT5; A0A0D9YFT5_9ORYZ

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OGLUM01G37310	OGLUM01G37310.1	OGLUM01G37310.1
OGLUM01G37310	OGLUM01G37310.2	OGLUM01G37310.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.00e-36	122.6	169	207
UBD/Beta-Prp	4.50e-58	197.9	37	212

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH + ++ ++f +d + +v+G+ D+ +kvWDl+ g+ll+
   Q: 169  GHRGAIRTIRFtPDgRWVVTGGEDNIVKVWDLTAGKLLH 207
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 87   vhtlkghedsvlslsfsp.sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltggh 179
           +  + +h+++v+sls+ + s+ ++++G++dr +++w + +++ l   lsgh+g+v  v+++  + l+ +Gs ++ ++lWdl+ +k++r ltg h
   Q: 37   LEEFVAHDAEVRSLSIGKkSSRVFITGGSDRKVNLWAIGKQTPLL-SLSGHTGSVEAVEFDTAEVLVLAGSSNGSIKLWDLEEAKVVRSLTG-H 128
           556779************666************************.*********************************************9.* PP
   S: 180  tdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlh 263
            +s +s++f++ g++++sgs d+++k+wd++++ c++t++gh+  ++ +rf+p++ ++v+g++D+ +++Wdl+ g+ll+ ++ h
   Q: 129  RSSCTSVEFHPFGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLHDFKFH 212
           ******************************************************************************999765 PP

Organism

Oryza glumaepatula

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MDPEKRGYRL PVEAVTGYFL EACIAQVYNS LTWKPKLEEF VAHDAEVRSL SIGKKSSRVF 60
ITGGSDRKVN LWAIGKQTPL LSLSGHTGSV EAVEFDTAEV LVLAGSSNGS IKLWDLEEAK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CATGTGGGGA CTTTCCTTTA TTTCATTCTC AAGGAACGCG AGAGAAGAGA ACCTTACTTT 60
AGCCAGCTCT GGTACAAAAG AAAAGAAACG AGAACAAAAG CGAAGCAAAG GGAGGCGAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	70.26	0.00e+00	1174.00
IUUC-Apl-003305	Anas platyrhynchos	47.96	2.00e-93	335.00
IUUC-Aca-004635	Anolis carolinensis	49.64	2.00e-86	312.00
IUUC-Ath-006624	Arabidopsis thaliana	67.76	3.00e-150	526.00
IUUC-Bdi-014531	Brachypodium distachyon	76.79	0.00e+00	1286.00
IUUC-Bol-015355	Brassica oleracea	67.23	6.00e-146	511.00
IUUC-Bra-017265	Brassica rapa	64.89	9.00e-147	514.00
IUUC-Cme-027305	Cyanidioschyzon merolae	31.60	1.00e-22	100.00
IUUC-Dre-028215	Danio rerio	47.62	4.00e-93	335.00
IUUC-Dme-032188	Drosophila melanogaster	36.84	4.00e-55	209.00
IUUC-Gac-042004	Gasterosteus aculeatus	47.16	1.00e-90	327.00
IUUC-Gma-043341	Glycine max	44.11	0.00e+00	647.00
IUUC-Hvu-047729	Hordeum vulgare	73.41	0.00e+00	947.00
IUUC-Mga-059608	Meleagris gallopavo	48.46	1.00e-93	336.00
IUUC-Mac-065245	Musa acuminata	55.86	0.00e+00	630.00
IUUC-Ont-071883	Oreochromis niloticus	46.26	2.00e-88	319.00
IUUC-Oba-075016	Oryza barthii	98.42	0.00e+00	1452.00
IUUC-Obr-076138	Oryza brachyantha	85.80	0.00e+00	1483.00
IUUC-Ogl-077401	Oryza glaberrima	93.88	0.00e+00	1594.00
IUUC-Oin-080042	Oryza indica	99.64	0.00e+00	1707.00
IUUC-Olo-080713	Oryza longistaminata	98.11	0.00e+00	1432.00
IUUC-Ome-081192	Oryza meridionalis	96.96	0.00e+00	1385.00
IUUC-Oni-082473	Oryza nivara	99.64	0.00e+00	1695.00
IUUC-Opu-083293	Oryza punctata	90.23	0.00e+00	1471.00
IUUC-Oru-085183	Oryza rufipogon	99.64	0.00e+00	1708.00
IUUC-Osa-085801	Oryza sativa	93.76	0.00e+00	1592.00
IUUC-Ola-087483	Oryzias latipes	44.56	3.00e-85	308.00
IUUC-Pfo-096755	Poecilia formosa	46.15	4.00e-88	318.00
IUUC-Pop-100006	Populus trichocarpa	76.97	7.00e-148	517.00
IUUC-Sit-110364	Setaria italica	76.79	0.00e+00	1211.00
IUUC-Sly-110991	Solanum lycopersicum	41.72	1.00e-160	559.00
IUUC-Sar-112953	Sorex araneus	44.74	2.00e-57	216.00
IUUC-Sbi-114389	Sorghum bicolor	68.23	0.00e+00	1140.00
IUUC-Tru-117865	Takifugu rubripes	44.82	3.00e-84	305.00
IUUC-Tae-125511	Triticum aestivum	73.65	0.00e+00	1237.00
IUUC-Tur-126181	Triticum urartu	70.41	0.00e+00	1234.00
IUUC-Xma-134133	Xiphophorus maculatus	45.48	3.00e-86	312.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence