iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098913

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000344

Gene Name

POPTRDRAFT_656978; POPTR_0008s13440g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0008s13440	POPTR_0008s13440.1	POPTR_0008s13440.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.40e-09	37.8	300	341

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl++++dg  ++ lpC+H+fha+C+ kw       + +++CPlC+
   Q: 300  CCICLSPYEDGaeLHALPCNHHFHATCIVKW------LKMNATCPLCK 341
           ********7776699****************......**********7 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSTENEPHAP LLRPRQDPPT SPTSRQTTLS ALLGRATGRR GPSMLVRETA ARELDERRAD 60
WGYSKPVVSL DMMWNAAFVV VSVTMLLVTV KERPNTPIRI WICGYALQCL VHVVLVWLEY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTAATCTCCA ATAAATCAAA TAATTAAAAT TTATCTTACG ATGTCTTTCT TTTCTATCTA 60
AGAAACTAGA ACAACACAGC TCTCATCCAC TGAACTTTAT CCAAAAATGT CAACCGAGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0008s13440g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006309	Arabidopsis lyrata	70.90	7.00e-121	426.00
IUUC-Ath-007135	Arabidopsis thaliana	70.99	3.00e-121	427.00
IUUC-Bdi-014419	Brachypodium distachyon	58.01	4.00e-72	264.00
IUUC-Bol-015503	Brassica oleracea	67.91	1.00e-101	362.00
IUUC-Bra-017089	Brassica rapa	64.93	4.00e-111	394.00
IUUC-Csv-026123	Ciona savignyi	37.36	5.00e-13	66.60
IUUC-Gma-042852	Glycine max	70.89	1.00e-108	385.00
IUUC-Lpe-050934	Leersia perrieri	58.28	1.00e-96	345.00
IUUC-Mtr-058387	Medicago truncatula	73.26	2.00e-109	388.00
IUUC-Mac-064512	Musa acuminata	60.56	3.00e-101	361.00
IUUC-Oba-075784	Oryza barthii	62.55	3.00e-76	277.00
IUUC-Obr-076831	Oryza brachyantha	62.21	2.00e-76	277.00
IUUC-Ogu-077960	Oryza glumaepatula	57.06	2.00e-85	308.00
IUUC-Oin-079107	Oryza indica	56.39	7.00e-82	296.00
IUUC-Olo-080835	Oryza longistaminata	64.19	6.00e-67	247.00
IUUC-Ome-081564	Oryza meridionalis	61.61	7.00e-96	343.00
IUUC-Oni-082731	Oryza nivara	57.36	5.00e-86	310.00
IUUC-Opu-083749	Oryza punctata	60.84	1.00e-88	318.00
IUUC-Oru-084835	Oryza rufipogon	57.36	5.00e-86	310.00
IUUC-Ppe-101978	Prunus persica	73.46	6.00e-128	449.00
IUUC-Sit-110199	Setaria italica	58.47	4.00e-87	314.00
IUUC-Sly-110887	Solanum lycopersicum	73.27	7.00e-117	412.00
IUUC-Stu-112563	Solanum tuberosum	73.68	1.00e-121	428.00
IUUC-Sbi-114428	Sorghum bicolor	58.39	8.00e-86	310.00
IUUC-Tca-121328	Theobroma cacao	77.36	6.00e-114	403.00
IUUC-Tae-123132	Triticum aestivum	59.22	4.00e-74	271.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence