iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aml-001573

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

ACTA01130684

Gene Name

RNF168; PANDA_004902

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSAMEG00000003786.1	ENSAMET00000004147.1	ENSAMEP00000003985.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/MIU	1.20e-08	34.8	168	189

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/MIU

   S: 1    rqkQprtDlELAqqLQqEeyqq 22
           +++Q+++D+ELA++L++ ++++
   Q: 168  MEEQLKSDEELARRLSININNF 189
           89******************98 PP

Organism

Ailuropoda melanoleuca

Protein Sequence
(Fasta)

MAVPKSAIPS LSECQCRICV EILIEPITLP CNHTLCNPCF QSTVEKASLC CPFCRRRVSS 60
WARYHTRRNS LVNMELWDII QKHYPKECKL RVSGQESEEI VDDCQPVRIL SKPGELRREY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTGTAC CCAAAAGCGC CATCCCCTCC TTGTCAGAAT GCCAGTGCCG CATCTGTGTG 60
GAAATCCTAA TCGAGCCCAT AACACTGCCT TGTAACCACA CGCTCTGTAA CCCATGCTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR034725--RNF168
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

aml:100478141

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002992	Amborella trichopoda	38.36	5.00e-10	58.50
IUUC-Apl-003963	Anas platyrhynchos	47.43	3.00e-73	269.00
IUUC-Aca-004420	Anolis carolinensis	67.50	5.00e-47	182.00
IUUC-Ath-007019	Arabidopsis thaliana	41.33	3.00e-10	60.80
IUUC-Ame-011521	Astyanax mexicanus	53.39	2.00e-36	146.00
IUUC-Bta-013002	Bos taurus	77.31	0.00e+00	753.00
IUUC-Bol-016180	Brassica oleracea	40.00	2.00e-10	59.70
IUUC-Bra-017905	Brassica rapa	40.00	2.00e-10	59.70
IUUC-Cja-019945	Callithrix jacchus	75.13	0.00e+00	704.00
IUUC-Cfa-020533	Canis familiaris	85.26	0.00e+00	854.00
IUUC-Cpo-021643	Cavia porcellus	63.15	1.00e-145	509.00
IUUC-Csa-023638	Chlorocebus sabaeus	74.30	0.00e+00	724.00
IUUC-Cho-024319	Choloepus hoffmanni	75.39	0.00e+00	691.00
IUUC-Cin-025679	Ciona intestinalis	39.81	3.00e-20	92.40
IUUC-Csv-026052	Ciona savignyi	36.36	1.00e-18	86.30
IUUC-Dre-028519	Danio rerio	51.38	5.00e-35	142.00
IUUC-Dno-029294	Dasypus novemcinctus	78.15	0.00e+00	758.00
IUUC-Ete-032714	Echinops telfairi	52.20	9.00e-83	300.00
IUUC-Eca-033343	Equus caballus	80.11	0.00e+00	779.00
IUUC-Eeu-034633	Erinaceus europaeus	34.38	1.00e-22	100.00
IUUC-Fca-036251	Felis catus	85.41	0.00e+00	841.00
IUUC-Fal-037048	Ficedula albicollis	45.97	2.00e-78	286.00
IUUC-Gmo-039400	Gadus morhua	45.22	5.00e-30	122.00
IUUC-Gga-040444	Gallus gallus	42.86	2.00e-78	286.00
IUUC-Gac-041735	Gasterosteus aculeatus	52.49	5.00e-38	150.00
IUUC-Gma-044332	Glycine max	33.04	2.00e-12	66.60
IUUC-Ggo-044940	Gorilla gorilla	72.32	5.00e-144	504.00
IUUC-Hsa-046424	Homo sapiens	75.70	0.00e+00	709.00
IUUC-Itr-048965	Ictidomys tridecemlineatus	76.33	0.00e+00	702.00
IUUC-Lch-050649	Latimeria chalumnae	39.68	6.00e-57	214.00
IUUC-Loc-051847	Lepisosteus oculatus	39.18	1.00e-50	193.00
IUUC-Laf-053938	Loxodonta africana	71.35	0.00e+00	742.00
IUUC-Mcc-055360	Macaca mulatta	74.08	0.00e+00	704.00
IUUC-Meu-056684	Macropus eugenii	49.83	3.00e-111	395.00
IUUC-Mtr-058007	Medicago truncatula	36.67	4.00e-12	65.50
IUUC-Mga-059699	Meleagris gallopavo	43.90	2.00e-81	296.00
IUUC-Mmr-060779	Microcebus murinus	79.51	0.00e+00	802.00
IUUC-Mdo-062225	Monodelphis domestica	54.28	1.00e-118	420.00
IUUC-Mmu-064239	Mus musculus	65.32	5.00e-165	574.00
IUUC-Mpu-066141	Mustela putorius furo	88.29	0.00e+00	912.00
IUUC-Mlu-067945	Myotis lucifugus	78.28	0.00e+00	754.00
IUUC-Nle-069769	Nomascus leucogenys	77.10	0.00e+00	718.00
IUUC-Opr-070905	Ochotona princeps	64.51	2.00e-173	602.00
IUUC-Ont-071477	Oreochromis niloticus	52.21	7.00e-33	134.00
IUUC-Oan-073531	Ornithorhynchus anatinus	44.42	1.00e-61	230.00
IUUC-Ocu-073832	Oryctolagus cuniculus	69.70	0.00e+00	642.00
IUUC-Opu-083547	Oryza punctata	38.67	3.00e-10	59.70
IUUC-Oru-084946	Oryza rufipogon	33.02	8.00e-08	51.60
IUUC-Ola-086478	Oryzias latipes	47.97	1.00e-32	131.00
IUUC-Oga-088318	Otolemur garnettii	77.66	0.00e+00	762.00
IUUC-Oar-089647	Ovis aries	76.09	0.00e+00	734.00
IUUC-Ptr-090516	Pan troglodytes	77.10	0.00e+00	729.00
IUUC-Pan-092302	Papio anubis	73.65	0.00e+00	699.00
IUUC-Psi-093604	Pelodiscus sinensis	43.51	2.00e-84	306.00
IUUC-Pfo-096441	Poecilia formosa	50.00	3.00e-33	136.00
IUUC-Pab-097729	Pongo abelii	76.05	0.00e+00	707.00
IUUC-Pop-099737	Populus trichocarpa	33.33	8.00e-10	59.70
IUUC-Pca-100552	Procavia capensis	62.69	9.00e-117	414.00
IUUC-Pva-102780	Pteropus vampyrus	79.97	0.00e+00	788.00
IUUC-Rno-105461	Rattus norvegicus	64.96	2.00e-165	575.00
IUUC-Sha-106809	Sarcophilus harrisii	56.15	3.00e-138	485.00
IUUC-Sja-107830	Schizosaccharomyces japonicus	30.21	7.00e-08	52.00
IUUC-Sly-111317	Solanum lycopersicum	39.00	1.00e-14	74.30
IUUC-Stu-112783	Solanum tuberosum	35.51	6.00e-14	71.60
IUUC-Sar-113579	Sorex araneus	61.75	7.00e-165	573.00
IUUC-Tgu-117187	Taeniopygia guttata	66.15	5.00e-48	183.00
IUUC-Tru-118182	Takifugu rubripes	51.72	2.00e-33	136.00
IUUC-Tsy-119217	Tarsius syrichta	59.40	2.00e-71	262.00
IUUC-Tni-120205	Tetraodon nigroviridis	52.46	1.00e-35	143.00
IUUC-Tvi-122557	Trichoderma virens	30.95	2.00e-05	43.90
IUUC-Tbe-127622	Tupaia belangeri	74.96	0.00e+00	740.00
IUUC-Ttr-128988	Tursiops truncatus	84.24	0.00e+00	839.00
IUUC-Vpa-130302	Vicugna pacos	77.33	1.00e-149	523.00
IUUC-Vvi-131424	Vitis vinifera	37.97	2.00e-10	59.70

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence