iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cpo-022145

Ensembl Protein ID

ENSCPOP00000011249.2

UniProt Accession

H0VLK8; H0VLK8_CAVPO

Genbank Protein ID

ENSCPOP00000011249

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AAKN02030718

Gene Name

RAD23B

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCPOG00000012503.3	ENSCPOT00000012622.2	ENSCPOP00000011249.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.40e-19	69.5	190	227
ULD/UDP/UBQ/UBQ_PIM	2.10e-27	94.8	1	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMGFdreealqaLraannnleaAveyLld 40
           +e ++ ++++MG++re+++ aLra++nn+++AveyLl 
   Q: 190  YENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLM 227
           5789********************************95 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           m++t+ktl++++f++++++++tv++lKeki++e+g   +p++ qkLIyaGkiL+Ddt L+e++i+++++v+++v+k+k
   Q: 1    MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGkdaFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78
           99*************************************************************************997 PP

Organism

Cavia porcellus

Protein Sequence
(Fasta)

MQVTLKTLQQ QTFKIDIDPE ETVKALKEKI ESEKGKDAFP VAGQKLIYAG KILNDDTALK 60
EYKIDEKNFV VVMVTKPKAV TTPAPATTQQ SSPVSTTTVS SSTATAVAQA STPAPALAPT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCAGGTCA CCCTGAAGAC CCTCCAGCAA CAGACTTTCA AGATCGACAT TGACCCGGAG 60
GAGACGGTAT GCGGGGACGG GGCGGACGCG TGCGGGGAGC GAGGGGCCTG GACTTGGGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0071942--C:XPC complex
GO:0003684--F:damaged DNA binding
GO:0000715--P:nucleotide-excision repair, DNA damage recognition
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0032434--P:regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0007283--P:spermatogenesis

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000088	Aegilops tauschii	45.10	3.00e-19	89.70
IUUC-Aml-001195	Ailuropoda melanoleuca	88.80	6.00e-91	327.00
IUUC-Atr-003116	Amborella trichopoda	38.96	7.00e-32	131.00
IUUC-Apl-003371	Anas platyrhynchos	71.53	9.00e-122	429.00
IUUC-Aca-004599	Anolis carolinensis	78.89	2.00e-92	332.00
IUUC-Aly-005498	Arabidopsis lyrata	40.33	2.00e-42	166.00
IUUC-Ath-006676	Arabidopsis thaliana	40.08	1.00e-43	170.00
IUUC-Afl-008605	Aspergillus flavus	48.00	2.00e-20	93.20
IUUC-Afu-008877	Aspergillus fumigatus	48.46	2.00e-20	92.80
IUUC-Aor-010032	Aspergillus oryzae	46.51	4.00e-20	92.40
IUUC-Ame-011107	Astyanax mexicanus	72.92	1.00e-34	140.00
IUUC-Bta-012922	Bos taurus	89.24	7.00e-125	440.00
IUUC-Bci-013933	Botrytis cinerea	34.78	1.00e-21	97.10
IUUC-Bdi-014355	Brachypodium distachyon	33.73	1.00e-47	183.00
IUUC-Bol-015641	Brassica oleracea	38.02	2.00e-40	159.00
IUUC-Bra-017983	Brassica rapa	38.02	2.00e-40	159.00
IUUC-Cja-018772	Callithrix jacchus	90.71	4.00e-135	474.00
IUUC-Cfa-020683	Canis familiaris	79.22	3.00e-133	468.00
IUUC-Cre-022810	Chlamydomonas reinhardtii	37.21	1.00e-29	124.00
IUUC-Csa-023714	Chlorocebus sabaeus	91.69	3.00e-151	527.00
IUUC-Cho-024814	Choloepus hoffmanni	58.19	5.00e-92	331.00
IUUC-Cin-025741	Ciona intestinalis	41.71	2.00e-36	146.00
IUUC-Csv-025823	Ciona savignyi	40.26	3.00e-43	168.00
IUUC-Cgl-026495	Colletotrichum gloeosporioides	52.00	9.00e-17	80.90
IUUC-Cne-027056	Cryptococcus neoformans	47.44	1.00e-15	77.40
IUUC-Cme-027260	Cyanidioschyzon merolae	26.68	1.00e-25	110.00
IUUC-Dre-028369	Danio rerio	72.24	4.00e-83	301.00
IUUC-Dno-029543	Dasypus novemcinctus	86.80	3.00e-130	457.00
IUUC-Dse-031336	Dothistroma septosporum	51.64	9.00e-19	87.80
IUUC-Dme-032027	Drosophila melanogaster	36.48	1.00e-62	233.00
IUUC-Ete-032583	Echinops telfairi	77.87	2.00e-65	243.00
IUUC-Eca-034243	Equus caballus	91.91	5.00e-88	317.00
IUUC-Eeu-034721	Erinaceus europaeus	86.70	3.00e-71	261.00
IUUC-Fca-035679	Felis catus	89.00	7.00e-128	450.00
IUUC-Fal-037148	Ficedula albicollis	81.78	2.00e-92	332.00
IUUC-Fox-037960	Fusarium oxysporum	47.24	9.00e-17	81.30
IUUC-Ggr-040116	Gaeumannomyces graminis	48.82	3.00e-17	82.80
IUUC-Gga-040544	Gallus gallus	73.72	3.00e-124	437.00
IUUC-Gac-042239	Gasterosteus aculeatus	56.25	1.00e-97	349.00
IUUC-Gma-043937	Glycine max	38.43	6.00e-41	161.00
IUUC-Ggo-045125	Gorilla gorilla	93.60	1.00e-98	353.00
IUUC-Hsa-046519	Homo sapiens	93.60	1.00e-98	353.00
IUUC-Hvu-047832	Hordeum vulgare	38.11	1.00e-32	134.00
IUUC-Itr-048295	Ictidomys tridecemlineatus	89.49	2.00e-128	452.00
IUUC-Kpa-049314	Komagataella pastoris	37.44	1.00e-28	120.00
IUUC-Lch-050553	Latimeria chalumnae	68.19	2.00e-101	362.00
IUUC-Lpe-050801	Leersia perrieri	38.56	7.00e-37	147.00
IUUC-Loc-051748	Lepisosteus oculatus	69.58	8.00e-76	277.00
IUUC-Lma-053328	Leptosphaeria maculans	48.68	1.00e-13	67.00
IUUC-Laf-054293	Loxodonta africana	90.96	1.00e-118	419.00
IUUC-Mcc-055600	Macaca mulatta	92.86	2.00e-105	375.00
IUUC-Meu-056082	Macropus eugenii	62.77	2.00e-70	259.00
IUUC-Mor-057287	Magnaporthe oryzae	50.00	2.00e-16	80.10
IUUC-Mpo-057609	Magnaporthe poae	49.18	1.00e-16	80.50
IUUC-Mtr-058148	Medicago truncatula	39.68	3.00e-41	162.00
IUUC-Mla-058961	Melampsora laricipopulina	44.36	6.00e-26	111.00
IUUC-Mga-060060	Meleagris gallopavo	41.16	6.00e-27	114.00
IUUC-Mvi-060220	Microbotryum violaceum	41.35	2.00e-21	97.40
IUUC-Mmr-061759	Microcebus murinus	89.02	6.00e-130	457.00
IUUC-Mdo-061967	Monodelphis domestica	84.43	2.00e-119	422.00
IUUC-Mmu-063258	Mus musculus	85.37	1.00e-144	506.00
IUUC-Mac-064724	Musa acuminata	38.27	3.00e-41	162.00
IUUC-Mpu-066389	Mustela putorius furo	89.20	2.00e-92	332.00
IUUC-Mlu-067999	Myotis lucifugus	87.66	6.00e-114	404.00
IUUC-Nfi-068390	Neosartorya fischeri	48.46	2.00e-20	92.80
IUUC-Ncr-068685	Neurospora crassa	50.39	8.00e-27	114.00
IUUC-Nle-069655	Nomascus leucogenys	91.20	4.00e-145	507.00
IUUC-Opr-070234	Ochotona princeps	87.04	4.00e-29	122.00
IUUC-Ocu-074831	Oryctolagus cuniculus	80.98	9.00e-130	456.00
IUUC-Obr-076909	Oryza brachyantha	37.88	1.00e-38	153.00
IUUC-Oin-079203	Oryza indica	33.88	3.00e-54	205.00
IUUC-Olo-080559	Oryza longistaminata	32.39	2.00e-48	185.00
IUUC-Oru-084942	Oryza rufipogon	31.65	8.00e-42	164.00
IUUC-Osa-085951	Oryza sativa	33.88	3.00e-54	205.00
IUUC-Ola-086540	Oryzias latipes	55.48	3.00e-64	238.00
IUUC-Olu-087843	Ostreococcus lucimarinus	42.29	7.00e-39	154.00
IUUC-Oga-088023	Otolemur garnettii	83.78	4.00e-132	464.00
IUUC-Oar-089964	Ovis aries	87.86	3.00e-111	395.00
IUUC-Ptr-091165	Pan troglodytes	90.96	1.00e-125	442.00
IUUC-Pan-092009	Papio anubis	91.02	5.00e-145	507.00
IUUC-Psi-093477	Pelodiscus sinensis	84.27	3.00e-87	315.00
IUUC-Pno-095064	Phaeosphaeria nodorum	47.37	8.00e-15	74.70
IUUC-Ppa-095964	Physcomitrella patens	45.24	8.00e-30	124.00
IUUC-Pfo-097385	Poecilia formosa	62.61	1.00e-69	256.00
IUUC-Pab-097868	Pongo abelii	93.60	9.00e-98	350.00
IUUC-Pop-099774	Populus trichocarpa	38.00	5.00e-37	147.00
IUUC-Pca-100652	Procavia capensis	90.00	6.00e-65	240.00
IUUC-Ppe-101368	Prunus persica	32.71	9.00e-56	210.00
IUUC-Pva-102137	Pteropus vampyrus	92.18	2.00e-93	335.00
IUUC-Ptt-103717	Puccinia triticina	45.45	1.00e-26	113.00
IUUC-Pte-104303	Pyrenophora teres	54.26	2.00e-21	96.30
IUUC-Pyt-104580	Pyrenophora triticirepentis	54.26	2.00e-21	96.30
IUUC-Rno-104844	Rattus norvegicus	86.30	9.00e-146	509.00
IUUC-Sce-106214	Saccharomyces cerevisiae	32.85	1.00e-13	70.50
IUUC-Sha-107073	Sarcophilus harrisii	84.32	2.00e-107	382.00
IUUC-Spo-108298	Schizosaccharomyces pombe	44.49	1.00e-38	153.00
IUUC-Ssl-108382	Sclerotinia sclerotiorum	32.17	5.00e-20	92.00
IUUC-Sit-109813	Setaria italica	33.66	2.00e-47	182.00
IUUC-Sar-112925	Sorex araneus	82.02	2.00e-85	309.00
IUUC-Ssc-116329	Sus scrofa	90.95	2.00e-130	458.00
IUUC-Tgu-116918	Taeniopygia guttata	68.36	1.00e-123	436.00
IUUC-Tru-118651	Takifugu rubripes	60.08	2.00e-73	268.00
IUUC-Tsy-118836	Tarsius syrichta	88.97	9.00e-48	184.00
IUUC-Tvi-122617	Trichoderma virens	52.56	2.00e-18	86.70
IUUC-Tae-125620	Triticum aestivum	39.83	2.00e-37	149.00
IUUC-Tme-127092	Tuber melanosporum	36.75	1.00e-26	114.00
IUUC-Tbe-127493	Tupaia belangeri	76.30	6.00e-66	244.00
IUUC-Ttr-128464	Tursiops truncatus	91.35	3.00e-94	338.00
IUUC-Uma-129484	Ustilago maydis	47.54	1.00e-11	64.30
IUUC-Vda-129946	Verticillium dahliae	49.61	1.00e-18	87.40
IUUC-Vpa-130357	Vicugna pacos	85.14	9.00e-87	313.00
IUUC-Vvi-130842	Vitis vinifera	37.65	6.00e-40	158.00
IUUC-Xtr-132679	Xenopus tropicalis	78.04	2.00e-70	259.00
IUUC-Yli-134615	Yarrowia lipolytica	42.58	7.00e-37	147.00
IUUC-Zma-135929	Zea mays	32.62	6.00e-52	197.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence