iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099916

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000343

Gene Name

POPTR_0007s03730g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0007s03730	POPTR_0007s03730.1	POPTR_0007s03730.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.40e-29	102.3	11	82

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           vp++f+CpIsl++M+ Pv l++G+tydr+sIe+wl+sg++tcP t+q l ++++vPn tl+rli+ w ++ +
   Q: 11   VPSFFRCPISLDVMKSPVSLCTGVTYDRTSIERWLDSGNNTCPATMQVLNSKEFVPNRTLQRLIKIWSDSVQ 82
           8******************************************************************98876 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MVRDVDLYVT VPSFFRCPIS LDVMKSPVSL CTGVTYDRTS IERWLDSGNN TCPATMQVLN 60
SKEFVPNRTL QRLIKIWSDS VQTQKDNRVD SAASSVVTRE DIEVLVKEMR AKKDKTDRLS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAAAGTAAA AAACAAAATG GTGAGAGACG TTGATTTGTA CGTTACAGTC CCTAGTTTCT 60
TCAGGTGTCC AATCTCACTT GACGTTATGA AATCACCTGT CAGTCTCTGT ACTGGAGTCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

pop:POPTR_0007s03730g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002532	Amborella trichopoda	47.13	3.00e-100	357.00
IUUC-Aly-005744	Arabidopsis lyrata	51.29	9.00e-101	359.00
IUUC-Ath-006924	Arabidopsis thaliana	53.22	2.00e-112	398.00
IUUC-Bdi-014371	Brachypodium distachyon	34.96	2.00e-32	132.00
IUUC-Bol-015831	Brassica oleracea	52.22	6.00e-113	400.00
IUUC-Bra-017320	Brassica rapa	51.76	2.00e-107	381.00
IUUC-Gma-042668	Glycine max	55.69	2.00e-120	425.00
IUUC-Mac-064700	Musa acuminata	38.13	3.00e-56	212.00
IUUC-Ogu-078852	Oryza glumaepatula	35.98	1.00e-33	136.00
IUUC-Oin-079861	Oryza indica	42.46	3.00e-33	135.00
IUUC-Olo-080672	Oryza longistaminata	76.92	1.00e-26	112.00
IUUC-Oni-083066	Oryza nivara	42.46	3.00e-33	135.00
IUUC-Oru-085038	Oryza rufipogon	74.65	7.00e-30	124.00
IUUC-Osa-086178	Oryza sativa	74.65	6.00e-30	124.00
IUUC-Ppe-101668	Prunus persica	55.24	2.00e-126	445.00
IUUC-Sit-110583	Setaria italica	42.77	5.00e-31	128.00
IUUC-Sly-111549	Solanum lycopersicum	50.47	2.00e-111	395.00
IUUC-Stu-112738	Solanum tuberosum	50.93	6.00e-114	403.00
IUUC-Tca-121270	Theobroma cacao	62.83	8.00e-135	473.00
IUUC-Tae-123322	Triticum aestivum	70.13	2.00e-29	122.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence