iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007100

UUCD1 version

UUC-ArT-00124

Ensembl Protein ID

AT3G06380.1

UniProt Accession

Q9SQU1; TLP9_ARATH

Genbank Protein ID

AAQ06243.1; AAF08576.1; AEE74384.1; ABH04572.1

Protein Name

Tubby-like F-box protein 9

Genbank Nucleotide ID

AF487270; AC011623; CP002686; BT026465

Gene Name

TULP9; At3g06380; F24P17.15

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G06380	AT3G06380.2	AT3G06380.2
AT3G06380	AT3G06380.1	AT3G06380.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	Mentha
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 adaptor/Cullin RING/SCF/F-box	F-box	16792696

Classification

Family	E-value	Score	Start	End
E3 adaptor/Cullin RING/SCF/F-box	0.00089	20.2	23	77

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/SCF/F-box

   S: 93   tpeegpdaglldrlpeeilveilkll.........dkeellraarvcrrwqelas 138
           +  + +d  ++++lpee+l eil ++         ++++++++a vcr+w+ l++
   Q: 23   STANSSDPFSWSELPEELLREILIRVetvdggdwpSRRNVVACAGVCRSWRILTK 77
           44578999*****************99999999988888************8876 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. Confers sensitivity to ABA during seed germination and early seedling development.

Protein Sequence
(Fasta)

MTFRSLLQEM RSRPHRVVHA AASTANSSDP FSWSELPEEL LREILIRVET VDGGDWPSRR 60
NVVACAGVCR SWRILTKEIV AVPEFSSKLT FPISLKQSGP RDSLVQCFIK RNRNTQSYHL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAACGTCATG TTTATCATTT TTTGTTGTTG TTTTTTCCAC ACAGGTTTAT CATCCTTATC 60
CTATCAGCGA ATAATAGAAG AAAAAGTACA AATTCTCTAA TAAAGCGGTA AAAGCGTTTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0938--Abscisic acid signaling pathway
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR001810--F-box_dom
IPR000007--Tubby_C
IPR025659--Tubby_C-like
IPR018066--Tubby_C_CS

PROSITE

PS01200--TUB_1

Pfam

PF00646--F-box
PF01167--Tub

PRINTS

PR01573--SUPERTUBBY

Gene Ontology

GO:0035091--F:phosphatidylinositol binding
GO:0003700--F:transcription factor activity, sequence-specific DNA binding
GO:0009738--P:abscisic acid-activated signaling pathway
GO:0016567--P:protein ubiquitination
GO:0006355--P:regulation of transcription, DNA-templated
GO:0009620--P:response to fungus

KEGG

ath:AT3G06380

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005764	Arabidopsis lyrata	92.43	0.00e+00	639.00
IUUC-Ago-007983	Ashbya gossypii	42.86	1.20e-01	32.00
IUUC-Bol-015133	Brassica oleracea	76.30	4.00e-171	593.00
IUUC-Bra-016817	Brassica rapa	76.00	2.00e-165	574.00
IUUC-Ont-071301	Oreochromis niloticus	35.83	8.00e-47	181.00
IUUC-Pfo-097190	Poecilia formosa	36.48	5.00e-47	181.00
IUUC-Pgr-103685	Puccinia graminis	34.78	2.30e+00	26.60
IUUC-Ssl-108566	Sclerotinia sclerotiorum	33.33	1.80e-01	30.80

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence