iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007701

Ensembl Protein ID

AT1G71840.1

UniProt Accession

Q8RXQ4; Q8RXQ4_ARATH

Genbank Protein ID

AAL86002.1; AAN71963.1; AEE35239.1

Protein Name

Putative uncharacterized protein At1g71840; Transducin family protein / WD-40 repeat family protein

Genbank Nucleotide ID

AY080732; BT001964; CP002684

Gene Name

At1g71840; F14O23.22; F14O23_22

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G71840	AT1G71840.1	AT1G71840.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.70e-40	136.1	111	147
UBD/Beta-Prp	3.00e-63	214.7	59	238

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           gH+dsv+claf  d  ll+sG+ Dg+++++D ++g+l
   Q: 111  GHKDSVSCLAFsYDgQLLASGGLDGVVQIFDASSGTL 147
           8**********95569***************988876 PP

UBD/Beta-Prp

   S: 83   tgkcvhtlkghedsvlslsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltggh 179
           + + vht++gh+ ++++l+ sp++   +++G+ d+ + +w++ +g +    l gh+++v+c++++ dg+ll+sG+lD++v+++d ++g+l   l g  
   Q: 59   NDDSVHTFTGHKGELYALACSPTDaTLVATGGGDDKAFLWKIGNGDWAA-ELPGHKDSVSCLAFSYDGQLLASGGLDGVVQIFDASSGTLKCVLDG-P 154
           6789******************88588889******************9.********************************************99.* PP
   S: 180  tdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlh 263
              ++++ +++ g  +++gs+d ++ +w+  ++  ++ + gh+ nv++ +f+p+++++ +gs+D s+ +W+ ++ + ++ +++h
   Q: 155  GAGIEWVRWHPRGHIVLAGSEDCSLWMWNADKEAYLNMFSGHNLNVTCGDFTPDGKLICTGSDDASLIVWNPKTCESIHIVKGH 238
           *************************************************************************99999988876 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND 60
DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI GNGDWAAELP GHKDSVSCLA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TAAACGTCGT TAGAATACAC AAAAGCGAAA CAGCGTCGTT TATTTATAAT GCGCTACTCA 60
CATGACGCCG TTTCACTTTT GTGTATACAA ACGACGTCGT TTAATAGAAA AATTTTTGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0030687--C:preribosome, large subunit precursor
GO:0051082--F:unfolded protein binding
GO:0042273--P:ribosomal large subunit biogenesis

KEGG

ath:AT1G71840

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000794	Aegilops tauschii	54.35	9.00e-109	386.00
IUUC-Aml-001781	Ailuropoda melanoleuca	33.14	7.00e-57	214.00
IUUC-Atr-003169	Amborella trichopoda	65.90	8.00e-139	485.00
IUUC-Aca-004594	Anolis carolinensis	32.29	2.00e-57	215.00
IUUC-Aly-006277	Arabidopsis lyrata	93.20	0.00e+00	650.00
IUUC-Ame-011651	Astyanax mexicanus	31.01	9.00e-49	186.00
IUUC-Bta-012833	Bos taurus	33.71	8.00e-58	216.00
IUUC-Bdi-014831	Brachypodium distachyon	55.69	2.00e-113	401.00
IUUC-Bol-015313	Brassica oleracea	86.62	0.00e+00	681.00
IUUC-Bra-017115	Brassica rapa	86.75	5.00e-174	602.00
IUUC-Cel-018305	Caenorhabditis elegans	24.47	4.00e-25	108.00
IUUC-Cja-019433	Callithrix jacchus	33.14	3.00e-57	214.00
IUUC-Cfa-020093	Canis familiaris	33.43	2.00e-57	215.00
IUUC-Cpo-021742	Cavia porcellus	33.14	3.00e-57	214.00
IUUC-Cre-022781	Chlamydomonas reinhardtii	41.43	2.00e-67	248.00
IUUC-Csa-023498	Chlorocebus sabaeus	33.43	1.00e-57	216.00
IUUC-Cho-024628	Choloepus hoffmanni	35.23	3.00e-46	178.00
IUUC-Cin-025244	Ciona intestinalis	32.38	2.00e-49	189.00
IUUC-Csv-026218	Ciona savignyi	29.26	8.00e-42	163.00
IUUC-Cne-026911	Cryptococcus neoformans	26.17	7.00e-32	130.00
IUUC-Dre-028528	Danio rerio	35.43	3.00e-56	211.00
IUUC-Dno-029297	Dasypus novemcinctus	33.43	2.00e-57	215.00
IUUC-Dme-031587	Drosophila melanogaster	26.36	4.00e-32	131.00
IUUC-Ete-033100	Echinops telfairi	36.79	4.00e-38	151.00
IUUC-Eca-034277	Equus caballus	33.43	2.00e-57	215.00
IUUC-Fca-036115	Felis catus	33.43	2.00e-57	215.00
IUUC-Fal-036864	Ficedula albicollis	33.33	2.00e-58	218.00
IUUC-Gmo-039090	Gadus morhua	32.97	2.00e-40	159.00
IUUC-Gga-040545	Gallus gallus	33.05	4.00e-58	218.00
IUUC-Gac-042027	Gasterosteus aculeatus	33.91	5.00e-57	214.00
IUUC-Gma-044168	Glycine max	63.54	1.00e-133	469.00
IUUC-Ggo-045036	Gorilla gorilla	33.43	3.00e-57	215.00
IUUC-Hsa-046749	Homo sapiens	33.43	3.00e-57	215.00
IUUC-Hvu-047217	Hordeum vulgare	51.66	7.00e-111	393.00
IUUC-Itr-048114	Ictidomys tridecemlineatus	33.43	2.00e-57	216.00
IUUC-Kpa-049147	Komagataella pastoris	26.16	2.00e-24	106.00
IUUC-Lch-049747	Latimeria chalumnae	29.81	1.00e-45	176.00
IUUC-Lpe-051433	Leersia perrieri	55.33	3.00e-113	400.00
IUUC-Loc-052406	Lepisosteus oculatus	35.13	6.00e-59	220.00
IUUC-Laf-053901	Loxodonta africana	33.43	3.00e-57	214.00
IUUC-Mcc-054990	Macaca mulatta	33.43	4.00e-57	214.00
IUUC-Meu-056844	Macropus eugenii	33.24	2.00e-56	212.00
IUUC-Mtr-057759	Medicago truncatula	62.02	2.00e-121	428.00
IUUC-Mla-058856	Melampsora laricipopulina	31.34	3.00e-48	185.00
IUUC-Mga-059749	Meleagris gallopavo	33.33	4.00e-58	218.00
IUUC-Mvi-060237	Microbotryum violaceum	32.69	5.00e-55	207.00
IUUC-Mmr-061270	Microcebus murinus	32.15	1.00e-54	206.00
IUUC-Mdo-062965	Monodelphis domestica	33.80	5.00e-57	214.00
IUUC-Mmu-064081	Mus musculus	33.71	4.00e-58	218.00
IUUC-Mac-065236	Musa acuminata	64.46	2.00e-130	457.00
IUUC-Mpu-066355	Mustela putorius furo	33.43	3.00e-57	215.00
IUUC-Mlu-067630	Myotis lucifugus	33.43	2.00e-55	209.00
IUUC-Nle-069701	Nomascus leucogenys	33.43	2.00e-57	215.00
IUUC-Opr-070337	Ochotona princeps	29.71	1.00e-45	176.00
IUUC-Ont-072614	Oreochromis niloticus	33.33	4.00e-56	211.00
IUUC-Ocu-073912	Oryctolagus cuniculus	33.43	2.00e-57	215.00
IUUC-Oba-075195	Oryza barthii	57.58	6.00e-114	403.00
IUUC-Obr-076059	Oryza brachyantha	55.85	6.00e-116	410.00
IUUC-Ogl-077318	Oryza glaberrima	56.73	2.00e-116	411.00
IUUC-Ogu-078579	Oryza glumaepatula	57.23	2.00e-114	405.00
IUUC-Oin-079340	Oryza indica	56.73	2.00e-116	411.00
IUUC-Olo-080813	Oryza longistaminata	57.83	1.00e-114	405.00
IUUC-Ome-081420	Oryza meridionalis	58.18	1.00e-114	405.00
IUUC-Oni-082650	Oryza nivara	57.58	6.00e-114	403.00
IUUC-Opu-083832	Oryza punctata	56.93	2.00e-114	405.00
IUUC-Oru-084207	Oryza rufipogon	57.58	6.00e-114	403.00
IUUC-Osa-085708	Oryza sativa	56.73	2.00e-116	411.00
IUUC-Ola-087164	Oryzias latipes	33.91	6.00e-56	210.00
IUUC-Olu-087824	Ostreococcus lucimarinus	43.31	4.00e-65	241.00
IUUC-Oga-088864	Otolemur garnettii	33.43	2.00e-57	215.00
IUUC-Oar-090115	Ovis aries	33.43	3.00e-57	215.00
IUUC-Ptr-091398	Pan troglodytes	33.43	3.00e-57	215.00
IUUC-Pan-092002	Papio anubis	33.43	2.00e-57	215.00
IUUC-Psi-093979	Pelodiscus sinensis	34.91	3.00e-29	120.00
IUUC-Pma-094618	Petromyzon marinus	29.02	6.00e-48	184.00
IUUC-Ppa-095351	Physcomitrella patens	53.87	7.00e-121	426.00
IUUC-Pfo-097078	Poecilia formosa	34.20	2.00e-56	212.00
IUUC-Pab-098540	Pongo abelii	33.43	2.00e-57	215.00
IUUC-Pop-099140	Populus trichocarpa	70.76	9.00e-148	515.00
IUUC-Pca-101072	Procavia capensis	33.74	4.00e-53	201.00
IUUC-Ppe-101979	Prunus persica	68.13	1.00e-142	498.00
IUUC-Pva-102400	Pteropus vampyrus	28.86	3.00e-43	168.00
IUUC-Pgr-103362	Puccinia graminis	30.42	4.00e-49	188.00
IUUC-Ptt-103756	Puccinia triticina	31.92	1.00e-34	140.00
IUUC-Rno-105672	Rattus norvegicus	33.43	2.00e-57	216.00
IUUC-Sja-107693	Schizosaccharomyces japonicus	29.89	7.00e-47	180.00
IUUC-Spo-108208	Schizosaccharomyces pombe	29.40	1.00e-50	192.00
IUUC-Smo-109168	Selaginella moellendorffii	50.52	6.00e-105	373.00
IUUC-Sit-109978	Setaria italica	56.43	5.00e-119	420.00
IUUC-Sly-111316	Solanum lycopersicum	66.86	1.00e-141	495.00
IUUC-Stu-111956	Solanum tuberosum	67.15	4.00e-141	493.00
IUUC-Sbi-114189	Sorghum bicolor	57.02	4.00e-116	410.00
IUUC-Sre-115029	Sporisorium reilianum	33.63	6.00e-50	191.00
IUUC-Ssc-116045	Sus scrofa	29.68	2.00e-41	162.00
IUUC-Tgu-117514	Taeniopygia guttata	33.05	6.00e-58	217.00
IUUC-Tru-117851	Takifugu rubripes	31.91	5.00e-54	204.00
IUUC-Tsy-119140	Tarsius syrichta	31.71	9.00e-51	193.00
IUUC-Tni-120248	Tetraodon nigroviridis	32.65	6.00e-55	207.00
IUUC-Tca-121686	Theobroma cacao	65.82	1.00e-139	488.00
IUUC-Tae-123208	Triticum aestivum	53.08	3.00e-112	397.00
IUUC-Tur-126174	Triticum urartu	53.92	9.00e-108	382.00
IUUC-Tme-127079	Tuber melanosporum	31.25	1.00e-16	80.10
IUUC-Ttr-128182	Tursiops truncatus	34.00	2.00e-57	215.00
IUUC-Uma-129624	Ustilago maydis	32.46	5.00e-50	191.00
IUUC-Vpa-130605	Vicugna pacos	32.48	4.00e-45	174.00
IUUC-Vvi-131319	Vitis vinifera	65.72	8.00e-151	525.00
IUUC-Xtr-132193	Xenopus tropicalis	32.49	5.00e-58	217.00
IUUC-Xma-133880	Xiphophorus maculatus	34.20	8.00e-57	213.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence