iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-006004

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

GL348713

Gene Name

PUB44; ARALYDRAFT_889531

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_102325.1	scaffold_102325.1	scaffold_102325.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.10e-26	93.4	23	100

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggk.....tcPvtrqplteedlvPnltlrrliqawceenss 74
           ++e+f+Cp+++e+M+dPv+l++G t++r++Iekw+++++      +cP+t+++l+++d+ P+++lr++i++w+++n+ 
   Q: 23   IYEAFICPLTKEVMHDPVTLENGRTFEREAIEKWFKECRDsgrppSCPLTSRELSSTDVSPSIALRNTIEEWRSRNDA 100
           89*********************************888777788******************************9975 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MVGSSDGNQS DDSSHFERGV DHIYEAFICP LTKEVMHDPV TLENGRTFER EAIEKWFKEC 60
RDSGRPPSCP LTSRELSSTD VSPSIALRNT IEEWRSRNDA AKLDIARQSL FLGNAETDIL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGTGAGTTTG AAGGATTAAG ATGGTTGGAA GCTCGGATGG TAATCAGTCA GATGATAGCT 60
CTCATTTTGA GCGAGGAGTA GATCATATCT ATGAAGCATT CATCTGCCCA TTGACAAAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0005886--C:plasma membrane
GO:0004842--F:ubiquitin-protein transferase activity
GO:0010150--P:leaf senescence
GO:0090359--P:negative regulation of abscisic acid biosynthetic process
GO:0010380--P:regulation of chlorophyll biosynthetic process
GO:0010271--P:regulation of chlorophyll catabolic process

KEGG

aly:ARALYDRAFT_889531

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007153	Arabidopsis thaliana	96.69	0.00e+00	1466.00
IUUC-Bol-016384	Brassica oleracea	86.13	0.00e+00	1260.00
IUUC-Bra-017058	Brassica rapa	86.64	0.00e+00	1291.00
IUUC-Gma-043617	Glycine max	67.13	0.00e+00	1008.00
IUUC-Lpe-050971	Leersia perrieri	59.42	0.00e+00	830.00
IUUC-Oba-075225	Oryza barthii	59.67	0.00e+00	869.00
IUUC-Ogl-077529	Oryza glaberrima	59.67	0.00e+00	867.00
IUUC-Ogu-078735	Oryza glumaepatula	59.42	0.00e+00	865.00
IUUC-Oin-079422	Oryza indica	59.67	0.00e+00	859.00
IUUC-Olo-080644	Oryza longistaminata	56.02	0.00e+00	788.00
IUUC-Ome-081455	Oryza meridionalis	59.30	0.00e+00	863.00
IUUC-Oni-082690	Oryza nivara	59.67	0.00e+00	859.00
IUUC-Opu-083157	Oryza punctata	59.55	0.00e+00	864.00
IUUC-Oru-085058	Oryza rufipogon	59.67	0.00e+00	859.00
IUUC-Osa-086000	Oryza sativa	59.67	0.00e+00	859.00
IUUC-Sly-111702	Solanum lycopersicum	67.32	0.00e+00	942.00
IUUC-Stu-111962	Solanum tuberosum	66.63	0.00e+00	1006.00
IUUC-Sbi-113974	Sorghum bicolor	51.71	0.00e+00	742.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence