iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Post-translational Modifications (PTMs)
dbPPT	dbPTM
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UBQ/UBQ_Other	2.50e-08	34.6	661	734

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UBQ/UBQ_Other

   S: 1    vqvtvksldgseltlkvnpsdtVaeLKekiekklgip.peqqrLiykGkiLeddktLadyglkdgstihllekk 73
           ++++vksl g+  +l+v   ++V+ L+ k ++kl +   e +++ ykGk+L+d k+La+ +++++s +hl+++k
   Q: 661  MKIIVKSLGGKGSKLHVGIEESVSSLRAKASRKLDFKeTEAVKMFYKGKELDDEKSLAAQNVQPNSLVHLIRTK 734
           789********88************************999*******************************987 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription. Core scaffold of the TFIID complex (By similarity).

Protein Sequence
(Fasta)

MAESNGKGSH NETSSDDDDE YEDNSRGFNL GFIFGNVDNS GDLDADYLDE DAKEHLSALA 60
DKLGSSLPDI NLLAKSERTA SDPAEQDYDR KAEDAVDYED IDEEYDGPEV QVVSEEDHLL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGCTTCGCAA TTTTCTTCTT TTTTTTGTTA TTACTTTTTT TTTTCCTCCG ATTTGAGAGT 60
TTGCTTACCT CGGAACTTCT CTCCGACATC GTACCGTCTC GTCCGATTGA GCTGGTTTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0010--Activator
KW-0103--Bromodomain
KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR001487--Bromodomain
IPR018359--Bromodomain_CS
IPR009067--TAF_II_230-bd
IPR022591--TFIID_sub1_DUF3591
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS00633--BROMODOMAIN_1
PS50014--BROMODOMAIN_2
PS50053--UBIQUITIN_2

Pfam

PF00439--Bromodomain
PF12157--DUF3591
PF09247--TBP-binding
PF00240--ubiquitin

PRINTS

PR00503--BROMODOMAIN

SMART

SM00297--BROMO
SM00213--UBQ

Gene Ontology

GO:0005669--C:transcription factor TFIID complex
GO:0004402--F:histone acetyltransferase activity
GO:0001129--F:RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0043565--F:sequence-specific DNA binding
GO:0017025--F:TBP-class protein binding
GO:0009294--P:DNA mediated transformation
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter

KEGG

ath:AT1G32750

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003084	Amborella trichopoda	54.33	0.00e+00	1127.00
IUUC-Aly-005900	Arabidopsis lyrata	92.22	0.00e+00	3323.00
IUUC-Bol-015982	Brassica oleracea	84.44	0.00e+00	2875.00
IUUC-Bra-017875	Brassica rapa	85.02	0.00e+00	2857.00
IUUC-Gma-044209	Glycine max	51.00	0.00e+00	1401.00
IUUC-Hvu-047343	Hordeum vulgare	44.60	2.00e-175	608.00
IUUC-Lpe-051566	Leersia perrieri	47.44	0.00e+00	1068.00
IUUC-Mpo-057370	Magnaporthe poae	33.33	9.00e-10	58.90
IUUC-Mac-064798	Musa acuminata	49.32	0.00e+00	1253.00
IUUC-Obr-076214	Oryza brachyantha	47.11	0.00e+00	998.00
IUUC-Oin-079864	Oryza indica	50.32	0.00e+00	942.00
IUUC-Olo-080777	Oryza longistaminata	49.50	0.00e+00	941.00
IUUC-Ome-081474	Oryza meridionalis	50.40	0.00e+00	1048.00
IUUC-Opu-083274	Oryza punctata	47.56	0.00e+00	1086.00
IUUC-Oru-085067	Oryza rufipogon	46.08	0.00e+00	967.00
IUUC-Ppa-095238	Physcomitrella patens	48.17	0.00e+00	811.00
IUUC-Pop-099371	Populus trichocarpa	54.17	0.00e+00	1685.00
IUUC-Ppe-101917	Prunus persica	52.81	0.00e+00	1305.00
IUUC-Smo-109033	Selaginella moellendorffii	47.24	0.00e+00	773.00
IUUC-Sit-110106	Setaria italica	46.64	0.00e+00	974.00
IUUC-Sly-111896	Solanum lycopersicum	51.73	0.00e+00	1539.00
IUUC-Tca-121471	Theobroma cacao	57.09	0.00e+00	1542.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence