iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007337

UUCD1 version

UUC-ArT-01141

Ensembl Protein ID

AT4G09100.1

UniProt Accession

Q9M0R7; Q4TU19; ATL39_ARATH

Genbank Protein ID

AAY57603.1; CAB78034.1; AEE82722.1; ABD60698.1

Protein Name

RING-H2 finger protein ATL39; RING-type E3 ubiquitin transferase ATL39

Genbank Nucleotide ID

DQ059117; AC005359; CP002687; BT024815

Gene Name

ATL39; At4g09100; F23J3.130; T8A17.4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G09100	AT4G09100.1	AT4G09100.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	5.10e-08	34.2	85	127

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C +Cl++fkd   ++++p C HvfhadC+  w       s + +CP+Cr
   Q: 85   CVVCLNEFKDDetLRLVPpCVHVFHADCVDIW------LSHSSTCPICR 127
           ********44334666657*************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSYFKRNEGT IVFAFASIGF IAFYIINYYI RRCRNRAAAA GDIEEARMSP RRPPRGLDAE 60
AIKSFPSFVY TEARGIEPGI GELECVVCLN EFKDDETLRL VPPCVHVFHA DCVDIWLSHS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGAAACACG AAGAAACACG GTGGCGCGTA GAAATCACCT AGAAACTACG AAGAAGACGT 60
GAACCCCACG TCTCTCTTTC TTCTTCTTCT TTCTCTATCT CTTCCCATTA CAAAACTCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING
SM00744--RINGv

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT4G09100

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005947	Arabidopsis lyrata	90.15	6.00e-63	231.00
IUUC-Bol-015334	Brassica oleracea	69.17	7.00e-47	178.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence