iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cre-022664

Ensembl Protein ID

EDO99419

UniProt Accession

A8J9A9; A8J9A9_CHLRE

Genbank Protein ID

EDO99419.1

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Genbank Nucleotide ID

DS496146

Gene Name

EIF3F; CHLREDRAFT_120842

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CHLREDRAFT_120842	EDO99419	EDO99419

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	38.81	2.00e-56	216.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Chlamydomonas reinhardtii

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MSTVLLPSGS SVSVKVHPVV LFAICDAYTR RKEHQDRVIG TLLGVVVDNT IEVKNCYVVP 60
HNESSDQVMV DVVHHKTMFE LHQKVAPHEV IVGWFATGSE LYNSDALIQE FYSKESQHPV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGCACTG TCCTACTCCC GAGCGGGAGC AGCGTCTCCG TTAAGGTTCA CCCGGTTGTG 60
CTATTTGCTA TCTGTGATGC GTATACCCGC CGTAAAGAGC ACCAAGACCG TGTGATCGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0005829--C:cytosol
GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0071541--C:eukaryotic translation initiation factor 3 complex, eIF3m
GO:0016020--C:membrane
GO:0005634--C:nucleus
GO:0003743--F:translation initiation factor activity
GO:0031369--F:translation initiation factor binding
GO:0001731--P:formation of translation preinitiation complex
GO:0009846--P:pollen germination
GO:0006446--P:regulation of translational initiation
GO:0009744--P:response to sucrose
GO:0006413--P:translational initiation

KEGG

cre:CHLREDRAFT_120842

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	41.52	4.00e-55	206.00
IUUC-Aml-001527	Ailuropoda melanoleuca	38.81	3.00e-58	216.00
IUUC-Atr-002686	Amborella trichopoda	45.00	2.00e-58	217.00
IUUC-Apl-003977	Anas platyrhynchos	36.73	1.00e-46	177.00
IUUC-Aca-004335	Anolis carolinensis	38.29	1.00e-58	218.00
IUUC-Aly-005945	Arabidopsis lyrata	41.18	1.00e-53	201.00
IUUC-Ath-007045	Arabidopsis thaliana	40.07	7.00e-52	195.00
IUUC-Acl-008365	Aspergillus clavatus	34.95	5.00e-44	169.00
IUUC-Afl-008742	Aspergillus flavus	34.26	1.00e-41	161.00
IUUC-Afu-009030	Aspergillus fumigatus	34.60	1.00e-43	168.00
IUUC-Ani-009212	Aspergillus nidulans	34.60	2.00e-43	167.00
IUUC-Ang-009712	Aspergillus niger	35.29	9.00e-45	172.00
IUUC-Aor-009885	Aspergillus oryzae	34.95	4.00e-44	169.00
IUUC-Ate-010315	Aspergillus terreus	34.26	5.00e-41	159.00
IUUC-Ame-010801	Astyanax mexicanus	36.03	2.00e-36	144.00
IUUC-Bgr-011982	Blumeria graminis	32.19	7.00e-40	155.00
IUUC-Bta-012804	Bos taurus	38.81	3.00e-58	217.00
IUUC-Bci-013891	Botrytis cinerea	32.19	3.00e-35	140.00
IUUC-Bdi-014328	Brachypodium distachyon	44.01	1.00e-57	214.00
IUUC-Bol-015446	Brassica oleracea	40.36	1.00e-53	201.00
IUUC-Bra-016862	Brassica rapa	40.36	9.00e-54	201.00
IUUC-Cel-018171	Caenorhabditis elegans	26.56	1.00e-26	111.00
IUUC-Cja-019335	Callithrix jacchus	38.81	5.00e-58	216.00
IUUC-Cfa-020138	Canis familiaris	38.43	1.00e-57	214.00
IUUC-Cpo-022109	Cavia porcellus	34.91	1.00e-46	178.00
IUUC-Csa-023994	Chlorocebus sabaeus	38.81	4.00e-58	216.00
IUUC-Cho-024351	Choloepus hoffmanni	28.73	1.00e-31	128.00
IUUC-Cin-025801	Ciona intestinalis	37.50	8.00e-53	198.00
IUUC-Csv-025805	Ciona savignyi	36.67	6.00e-50	189.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	31.93	2.00e-37	147.00
IUUC-Cne-026868	Cryptococcus neoformans	30.74	2.00e-29	121.00
IUUC-Cme-027328	Cyanidioschyzon merolae	26.42	2.00e-21	94.70
IUUC-Dre-028085	Danio rerio	42.54	4.00e-64	236.00
IUUC-Dno-030099	Dasypus novemcinctus	38.81	7.00e-58	215.00
IUUC-Dor-030324	Dipodomys ordii	33.96	5.00e-46	176.00
IUUC-Dse-031314	Dothistroma septosporum	35.64	1.00e-48	184.00
IUUC-Dme-031926	Drosophila melanogaster	36.20	2.00e-47	180.00
IUUC-Ete-032569	Echinops telfairi	38.06	5.00e-54	202.00
IUUC-Eca-033502	Equus caballus	36.57	2.00e-53	201.00
IUUC-Eeu-034883	Erinaceus europaeus	27.27	8.00e-21	91.30
IUUC-Fca-035873	Felis catus	38.81	4.00e-58	216.00
IUUC-Fal-036921	Ficedula albicollis	39.55	6.00e-60	222.00
IUUC-Fox-037765	Fusarium oxysporum	31.36	4.00e-31	126.00
IUUC-Fso-038240	Fusarium solani	31.71	1.00e-32	131.00
IUUC-Gmo-038864	Gadus morhua	42.75	1.00e-65	241.00
IUUC-Ggr-039862	Gaeumannomyces graminis	29.74	1.00e-28	119.00
IUUC-Gga-040952	Gallus gallus	39.93	8.00e-61	225.00
IUUC-Gac-041677	Gasterosteus aculeatus	43.28	2.00e-65	240.00
IUUC-Gma-043061	Glycine max	41.45	2.00e-51	194.00
IUUC-Ggo-045591	Gorilla gorilla	38.81	3.00e-58	216.00
IUUC-Hsa-046860	Homo sapiens	38.81	4.00e-58	216.00
IUUC-Hvu-047410	Hordeum vulgare	37.50	3.00e-26	108.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	38.43	1.00e-57	214.00
IUUC-Lch-049410	Latimeria chalumnae	52.31	9.00e-40	154.00
IUUC-Lpe-051102	Leersia perrieri	42.81	9.00e-55	204.00
IUUC-Loc-052016	Lepisosteus oculatus	38.15	3.00e-51	193.00
IUUC-Lma-053157	Leptosphaeria maculans	34.26	9.00e-45	172.00
IUUC-Laf-054568	Loxodonta africana	38.81	8.00e-58	215.00
IUUC-Mcc-054613	Macaca mulatta	38.81	4.00e-58	216.00
IUUC-Meu-056832	Macropus eugenii	25.47	7.00e-19	85.10
IUUC-Mor-057104	Magnaporthe oryzae	30.52	6.00e-31	126.00
IUUC-Mtr-058445	Medicago truncatula	41.91	4.00e-61	226.00
IUUC-Mla-059038	Melampsora laricipopulina	31.62	9.00e-36	142.00
IUUC-Mga-059548	Meleagris gallopavo	37.39	3.00e-50	189.00
IUUC-Mvi-060520	Microbotryum violaceum	27.27	5.00e-18	83.20
IUUC-Mdo-062376	Monodelphis domestica	39.18	3.00e-59	220.00
IUUC-Mmu-063254	Mus musculus	38.81	3.00e-57	213.00
IUUC-Mac-065635	Musa acuminata	45.21	6.00e-61	225.00
IUUC-Mpu-066314	Mustela putorius furo	38.81	4.00e-58	216.00
IUUC-Mlu-067512	Myotis lucifugus	39.55	5.00e-59	219.00
IUUC-Nfi-068262	Neosartorya fischeri	34.26	4.00e-43	166.00
IUUC-Ncr-068872	Neurospora crassa	29.55	2.00e-33	134.00
IUUC-Nle-070118	Nomascus leucogenys	38.81	5.00e-58	216.00
IUUC-Opr-071228	Ochotona princeps	36.21	5.00e-47	179.00
IUUC-Ont-072600	Oreochromis niloticus	43.28	2.00e-66	243.00
IUUC-Oan-073584	Ornithorhynchus anatinus	36.55	4.00e-49	186.00
IUUC-Ocu-074542	Oryctolagus cuniculus	38.81	2.00e-58	217.00
IUUC-Oba-075923	Oryza barthii	42.76	1.00e-58	218.00
IUUC-Obr-076313	Oryza brachyantha	43.02	1.00e-55	207.00
IUUC-Ogl-076932	Oryza glaberrima	42.76	1.00e-58	218.00
IUUC-Ogu-078152	Oryza glumaepatula	42.76	1.00e-58	218.00
IUUC-Oin-079528	Oryza indica	42.76	1.00e-58	218.00
IUUC-Olo-080401	Oryza longistaminata	42.76	1.00e-58	218.00
IUUC-Ome-081553	Oryza meridionalis	43.11	5.00e-59	219.00
IUUC-Oni-082090	Oryza nivara	42.76	9.00e-59	218.00
IUUC-Opu-083583	Oryza punctata	42.64	8.00e-55	204.00
IUUC-Oru-084492	Oryza rufipogon	42.76	1.00e-58	218.00
IUUC-Osa-085383	Oryza sativa	42.76	1.00e-58	218.00
IUUC-Ola-086835	Oryzias latipes	43.28	4.00e-65	239.00
IUUC-Olu-087716	Ostreococcus lucimarinus	33.45	3.00e-33	133.00
IUUC-Oga-088886	Otolemur garnettii	39.55	4.00e-59	219.00
IUUC-Oar-090079	Ovis aries	38.81	2.00e-58	217.00
IUUC-Ptr-091457	Pan troglodytes	38.81	4.00e-58	216.00
IUUC-Pan-092317	Papio anubis	31.02	7.00e-28	115.00
IUUC-Psi-093129	Pelodiscus sinensis	37.55	5.00e-50	189.00
IUUC-Pma-094488	Petromyzon marinus	42.54	9.00e-65	238.00
IUUC-Pno-095049	Phaeosphaeria nodorum	34.60	2.00e-45	174.00
IUUC-Ppa-095341	Physcomitrella patens	44.06	7.00e-70	255.00
IUUC-Pfo-096286	Poecilia formosa	42.35	1.00e-66	244.00
IUUC-Pab-097765	Pongo abelii	38.81	4.00e-58	216.00
IUUC-Pop-099131	Populus trichocarpa	41.94	3.00e-62	229.00
IUUC-Pca-100524	Procavia capensis	28.88	3.00e-31	126.00
IUUC-Ppe-101934	Prunus persica	44.49	2.00e-64	237.00
IUUC-Pva-102577	Pteropus vampyrus	39.18	1.00e-58	218.00
IUUC-Pgr-103521	Puccinia graminis	32.04	4.00e-36	143.00
IUUC-Pte-104304	Pyrenophora teres	34.95	6.00e-46	176.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	34.95	4.00e-46	176.00
IUUC-Rno-105717	Rattus norvegicus	38.81	9.00e-58	215.00
IUUC-Sha-107190	Sarcophilus harrisii	38.78	1.00e-56	211.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	37.89	5.00e-48	182.00
IUUC-Spo-108355	Schizosaccharomyces pombe	34.49	3.00e-44	170.00
IUUC-Smo-109374	Selaginella moellendorffii	46.81	6.00e-75	271.00
IUUC-Sit-110119	Setaria italica	43.01	1.00e-56	211.00
IUUC-Sly-111570	Solanum lycopersicum	40.71	5.00e-55	206.00
IUUC-Stu-112308	Solanum tuberosum	42.86	3.00e-60	223.00
IUUC-Sar-113515	Sorex araneus	31.58	1.00e-11	60.50
IUUC-Sbi-114605	Sorghum bicolor	42.65	5.00e-57	213.00
IUUC-Sre-114906	Sporisorium reilianum	39.01	2.00e-49	187.00
IUUC-Tgu-117087	Taeniopygia guttata	35.71	5.00e-48	182.00
IUUC-Tru-117700	Takifugu rubripes	42.54	1.00e-66	244.00
IUUC-Tni-120470	Tetraodon nigroviridis	42.16	6.00e-65	238.00
IUUC-Tca-121109	Theobroma cacao	43.93	1.00e-56	211.00
IUUC-Tre-122095	Trichoderma reesei	31.25	7.00e-32	129.00
IUUC-Tvi-122580	Trichoderma virens	30.90	3.00e-31	127.00
IUUC-Tae-125129	Triticum aestivum	43.75	1.00e-58	217.00
IUUC-Tur-126658	Triticum urartu	37.32	6.00e-48	182.00
IUUC-Tme-127043	Tuber melanosporum	36.84	1.00e-48	184.00
IUUC-Tbe-127927	Tupaia belangeri	38.81	4.00e-58	216.00
IUUC-Ttr-129231	Tursiops truncatus	38.81	4.00e-58	216.00
IUUC-Uma-129578	Ustilago maydis	39.72	5.00e-50	189.00
IUUC-Vda-129730	Verticillium dahliae	32.06	1.00e-37	148.00
IUUC-Vvi-130968	Vitis vinifera	45.39	7.00e-65	238.00
IUUC-Xtr-132203	Xenopus tropicalis	41.04	9.00e-61	224.00
IUUC-Xma-133972	Xiphophorus maculatus	43.28	8.00e-67	244.00
IUUC-Yli-134553	Yarrowia lipolytica	32.30	1.00e-32	131.00
IUUC-Zma-134941	Zea mays	42.28	4.00e-52	196.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence