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Tag Content
UUCD2 ID IUUC-Aly-006226
UUCD1 version UUC-ArL-00982
Ensembl Protein ID fgenesh2_kg.6__808__AT5G08390.1
UniProt Accession D7M1B9; D7M1B9_ARALL
Genbank Protein ID EFH47583.1
Protein Name Katanin p80 WD40 repeat-containing subunit B1 homolog
Genbank Nucleotide ID GL348718
Gene Name ARALYDRAFT_487674
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
fgenesh2_kg.6__808__AT5G08390.1 fgenesh2_kg.6__808__AT5G08390.1 fgenesh2_kg.6__808__AT5G08390.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 3.30e-37 125.5 141 179
UBD/Beta-Prp 4.40e-59 200.8 14 252
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
    gHt +v+ l+f +d + +vsG+ D+++kvWDl+ g+ll+
   Q: 141 GHTRGVNVLRFtPDgRWIVSGGEDNVVKVWDLTAGKLLH 179
    8***********9999*******************9987 PP
   


   UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstg 84
    +h++ ++c+k+ +++++l+tg++d+++ +w + +++++ sl+gh++++ +v+f+ ++ + + g+ +tik+wdl+
   Q: 14 AHSAAVNCLKIgRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEGLVAAGAASGTIKLWDLEEA 91
    789999*****99***************************************************************** PP
   S: 85 kcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvr 162
    k v+tl+gh ++ +s++f+p g++++sGs d +++wd++++ c++ t +gh++ vn++++ pdg+ +vsG+ D++v+
   Q: 92 KVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNVLRFTPDGRWIVSGGEDNVVK 168
    **********************************************.******************************* PP
   S: 163 lWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsg 240
    +Wdl gkll+++++ h+++++sl+f++ + l++gs d+tvk+wdl+t e + + t+ v+++ f p+++ +++g
   Q: 169 VWDLTAGKLLHEFKS-HEGQIQSLDFHPHEFLLATGSADKTVKFWDLETFELIGSGGTETTGVRCLTFNPDGKSVLCG 245
    **************9.**********************************************************9999 PP
   S: 241 ssDgsiri 248
    +s++i
   Q: 246 L-QESLKI 252
    6.444444 PP
   

Organism Arabidopsis lyrata
Functional Description
(View)

Functional Description



     May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.
Protein Sequence
(Fasta)
MNTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS 60
GIDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKVVRTLTGH RSNCVSVNFH PFGEFFASGS 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Aly-006226|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TGTCTGTGTG TCATTCACAT CTCTCTCCTC TCTTCTTCGC CATTAGAGGA GAAAAATATA 60
AGTTAACTCA TCCAACAACT CCATTTTTTA TCTTCTTCGT AAAGGCAACA ACGACGTTTA 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Aly-006226|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG aly:ARALYDRAFT_487674
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ath-007323 Arabidopsis thaliana 96.55 0.00e+00 1600.00
IUUC-Bol-015242 Brassica oleracea 84.42 0.00e+00 1329.00
IUUC-Bra-017390 Brassica rapa 84.43 0.00e+00 1348.00
IUUC-Cin-025156 Ciona intestinalis 45.79 1.00e-84 306.00
IUUC-Csv-025962 Ciona savignyi 47.77 4.00e-84 303.00
IUUC-Dme-032188 Drosophila melanogaster 37.75 1.00e-56 214.00
IUUC-Ogu-078428 Oryza glumaepatula 45.34 8.00e-165 573.00
IUUC-Pop-099149 Populus trichocarpa 61.18 0.00e+00 971.00
IUUC-Tme-127141 Tuber melanosporum 29.81 2.00e-29 123.00
Created Date 25-Jun-2017

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