iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007421

UUCD1 version

UUC-ArT-00616

Ensembl Protein ID

AT4G32600.1

UniProt Accession

Q8VY23; Q8VY23_ARATH

Genbank Protein ID

AAL66968.1; AAL91189.1; AAM20289.1; AEE86087.1; ANM68058.1

Protein Name

C3H4 type zinc finger protein; Putative uncharacterized protein At4g32600

Genbank Nucleotide ID

AY074271; AY081300; AY096655; CP002687; CP002687

Gene Name

At4g32600; F4D11.200; F4D11_200

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G32600	AT4G32600.1	AT4G32600.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
HINT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.20e-07	31.7	363	404

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl  +   ++++ lpC H+fh++C+ kw       + +++CPlC+
   Q: 363  CCICLAKYanNEELRELPCSHFFHKECVDKW------LKINASCPLCK 404
           ********88555******************......**********7 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGVSLLKQQH RITNQADTFS RFMERSPENN LSRNEHIIID IPRNAAIASS SSSHDRISNV 60
LEPLQHEEER PSTVSPMAAP QPATATASSS SSMRSNPRSV RRRRSPLNSG LWISIELFLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTTCTTTGT ACATTTATTT ATATATAATA CTAGTTTTTG TGTGATTGCT GTTTGGCTCC 60
GAATTTTATA TCCATAATTT TTTTTTTTTA ATCTCCCCTT GGTTGATCGG TGAACACAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING
SM00744--RINGv

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0005886--C:plasma membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002558	Amborella trichopoda	61.64	2.00e-100	358.00
IUUC-Aly-005824	Arabidopsis lyrata	97.10	0.00e+00	756.00
IUUC-Bol-015448	Brassica oleracea	82.39	2.00e-179	621.00
IUUC-Bra-017950	Brassica rapa	84.47	5.00e-176	609.00
IUUC-Cme-027312	Cyanidioschyzon merolae	29.02	3.00e-21	95.10
IUUC-Gma-043836	Glycine max	63.95	1.00e-111	395.00
IUUC-Lpe-050851	Leersia perrieri	62.58	6.00e-111	393.00
IUUC-Mtr-058402	Medicago truncatula	68.31	3.00e-108	384.00
IUUC-Mac-065365	Musa acuminata	54.94	2.00e-92	332.00
IUUC-Ncr-068932	Neurospora crassa	33.33	3.00e-10	59.30
IUUC-Oba-075730	Oryza barthii	62.25	3.00e-110	391.00
IUUC-Obr-076189	Oryza brachyantha	61.59	1.00e-109	389.00
IUUC-Ogl-077454	Oryza glaberrima	62.25	3.00e-110	391.00
IUUC-Ogu-078902	Oryza glumaepatula	62.25	3.00e-110	390.00
IUUC-Oin-079324	Oryza indica	62.25	3.00e-110	390.00
IUUC-Olo-080365	Oryza longistaminata	62.25	4.00e-110	390.00
IUUC-Oni-082514	Oryza nivara	62.25	3.00e-110	391.00
IUUC-Opu-083647	Oryza punctata	61.92	8.00e-110	389.00
IUUC-Ppa-095270	Physcomitrella patens	58.84	9.00e-79	286.00
IUUC-Pop-099755	Populus trichocarpa	69.65	8.00e-143	499.00
IUUC-Ppe-102005	Prunus persica	62.17	4.00e-134	470.00
IUUC-Ptt-103787	Puccinia triticina	44.44	1.00e-10	59.30
IUUC-Smo-108799	Selaginella moellendorffii	60.06	2.00e-90	325.00
IUUC-Sit-109918	Setaria italica	63.76	3.00e-106	377.00
IUUC-Sly-111768	Solanum lycopersicum	59.90	2.00e-110	391.00
IUUC-Stu-112684	Solanum tuberosum	63.24	7.00e-109	386.00
IUUC-Sbi-113823	Sorghum bicolor	63.25	2.00e-109	388.00
IUUC-Tca-121104	Theobroma cacao	66.75	8.00e-143	499.00
IUUC-Tae-124640	Triticum aestivum	60.19	8.00e-81	293.00
IUUC-Tur-126522	Triticum urartu	60.51	2.00e-80	293.00
IUUC-Vvi-131601	Vitis vinifera	68.38	5.00e-122	430.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence