iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113874

UUCD1 version

UUC-SoB-00061

Ensembl Protein ID

Sb02g036960.1

UniProt Accession

A0A1B6QF28; A0A1B6QF28_SORBI

Genbank Protein ID

KXG36525.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000761

Gene Name

SORBI_002G347000

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb02g036960	Sb02g036960.1	Sb02g036960.1
Sb02g036960	Sb02g036960.2	Sb02g036960.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-48	161.5	165	203
UBD/Beta-Prp	4.30e-67	227.2	23	327

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllks 38
           H+++vt+++f  d  ++vsGs+Dg++k+WD +tg +lk+
   Q: 165  HSEPVTSVHFiRDgSIVVSGSHDGSCKIWDAKTGACLKT 203
           9**********887999*******************986 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdls...............tgkcvht 89
           h+  ++cv fsp ++llat+s dgt+ + + ++ ++++ l gh+++v+++++s ++ +l ++s+Drti++wd++               +  c+++
   Q: 23   HSRAVSCVRFSPCGRLLATASLDGTVALLSPSSLSVIAVLRGHSDGVSDLSWSTESYYLCSASDDRTIRIWDIRpvlaggaqaaaadpgADRCIRV 118
           778899*******************************************************************9**************9******* PP
   S: 90   lkghedsvlslsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvy 184
           lkgh++ v s +f+p++ + ++sG+ d t+r+wd+++g c +   + h++ v++v++  dg+++vsGs D+ +++Wd ktg +l+t   +++++v 
   Q: 119  LKGHTNFVFSANFNPQTsSQIASGGFDCTVRIWDVKNGRCTR-AIEAHSEPVTSVHFIRDGSIVVSGSHDGSCKIWDAKTGACLKTVIDEKKPAVS 213
           ***************655************************.99******************************************887888888 PP
   S: 185  slsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs...pnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgd 277
              f++ngk+++ + ld+++kl ++ tg+ ++ + gh +  ++++      n++++vsgs+D+ ++iWdl+ +++l++l++h ++visv++ ++++
   Q: 214  FSMFSPNGKFILVAMLDNSLKLCNFATGKFLKVYSGHVNRQYCIQSAfsvTNGKYIVSGSEDNCVYIWDLQGRNILQKLEGHTDTVISVSC-HPTE 308
           888***************************************998766799****************************************.**** PP
   S: 278  nvlvlgse..dskvniwkl 294
           n++++g+   d +v++w +
   Q: 309  NKIASGGLdnDRTVRLWVQ 327
           ******9888999999965 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MSQPPAPAPP YRPYRQVREA TPHSRAVSCV RFSPCGRLLA TASLDGTVAL LSPSSLSVIA 60
VLRGHSDGVS DLSWSTESYY LCSASDDRTI RIWDIRPVLA GGAQAAAADP GADRCIRVLK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTAGTACCAC AGCAGACCTA GCTAGCGAAT AGTGCCGCAG AGAATCCGGC CCGATTCAGT 60
TTCCCATCGC GTGGAGAGGG GGCGGCGTTG CCGTTACCGA CCATGTCGCA GCCGCCGGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR027295--Quinoprotein_ADH-like_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000502	Aegilops tauschii	81.25	3.00e-141	493.00
IUUC-Atr-002924	Amborella trichopoda	65.59	9.00e-110	389.00
IUUC-Aly-005655	Arabidopsis lyrata	62.74	2.00e-116	410.00
IUUC-Ath-007545	Arabidopsis thaliana	62.42	5.00e-116	409.00
IUUC-Bdi-014642	Brachypodium distachyon	85.94	1.00e-159	554.00
IUUC-Bol-015533	Brassica oleracea	63.52	4.00e-113	400.00
IUUC-Bra-017641	Brassica rapa	63.19	6.00e-113	399.00
IUUC-Gma-042658	Glycine max	60.51	6.00e-114	402.00
IUUC-Mtr-058429	Medicago truncatula	61.54	6.00e-107	379.00
IUUC-Oba-075292	Oryza barthii	84.98	2.00e-152	530.00
IUUC-Obr-076723	Oryza brachyantha	87.30	4.00e-149	519.00
IUUC-Ogl-077247	Oryza glaberrima	87.82	8.00e-156	541.00
IUUC-Ogu-078143	Oryza glumaepatula	86.71	9.00e-155	538.00
IUUC-Oin-080203	Oryza indica	86.71	1.00e-154	538.00
IUUC-Ome-082003	Oryza meridionalis	85.03	2.00e-153	533.00
IUUC-Oni-082216	Oryza nivara	86.71	1.00e-154	538.00
IUUC-Oru-084935	Oryza rufipogon	86.75	3.00e-155	540.00
IUUC-Osa-085444	Oryza sativa	87.03	3.00e-155	540.00
IUUC-Pop-099988	Populus trichocarpa	64.22	4.00e-119	419.00
IUUC-Ppe-101291	Prunus persica	64.17	3.00e-117	413.00
IUUC-Sit-110579	Setaria italica	92.23	4.00e-164	569.00
IUUC-Sly-111880	Solanum lycopersicum	65.18	4.00e-106	376.00
IUUC-Stu-112051	Solanum tuberosum	64.54	3.00e-104	370.00
IUUC-Tca-121324	Theobroma cacao	64.65	8.00e-117	412.00
IUUC-Tae-124942	Triticum aestivum	86.04	5.00e-156	542.00
IUUC-Tur-126219	Triticum urartu	82.70	7.00e-87	312.00
IUUC-Vvi-131551	Vitis vinifera	63.46	7.00e-115	405.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence