iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111901

Ensembl Protein ID

Solyc02g078800.2.1

UniProt Accession

K4B9A4; K4B9A4_SOLLC

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc02g078800.2	Solyc02g078800.2.1	Solyc02g078800.2.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.50e-35	119.7	140	178
UBD/Beta-Prp	1.30e-55	189.5	13	260

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +++ ++f +d + +vsG+ D+++kvWDl+ g+ll+
   Q: 140  GHTRGISTIRFsPDgRWVVSGGFDNVVKVWDLTAGKLLH 178
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsv 97
           +h++ ++c+ f ++ +++++tg++d+ + +w++ +++   slsgh++++ +v f++ + + + g++ ++ik+wdl+  k+v+tl+gh ++ 
   Q: 13   AHSGNVNCLRFgKKTRRQFLTGGDDQNVNLWSIGKPTSTTSLSGHTSPIESVAFDSAEVLVLAGASSGVIKLWDLEETKMVRTLTGHRSYC 103
           789999****************************************************9999***************************** PP
   S: 98   lslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsf 188
           ++++f+p g++++sGs d  +++wd++++ c++ t +gh++ +++++++pdg+ +vsG+ D++v++Wdl  gkll++++  h++ ++s++f
   Q: 104  TACEFHPFGEFFASGSMDTNLKIWDIRKKGCIH-TYKGHTRGISTIRFSPDGRWVVSGGFDNVVKVWDLTAGKLLHDFKF-HEGHIRSIDF 192
           *********************************.*********************************************9.********** PP
   S: 189  dsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdll 257
           ++  + l++gs d+tv++wdl+t e + + +   + v+s+ f+p++  l +g  D s++++  +  ++ 
   Q: 193  HPLEFLLATGSADRTVNFWDLETFELIGSTRREAAGVRSITFHPEGRTLFCG-LDDSLKVYSWEPVNCH 260
           *******************************************999999988.6888999755554444 PP

Organism

Solanum lycopersicum

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MANRGYKLQE FVAHSGNVNC LRFGKKTRRQ FLTGGDDQNV NLWSIGKPTS TTSLSGHTSP 60
IESVAFDSAE VLVLAGASSG VIKLWDLEET KMVRTLTGHR SYCTACEFHP FGEFFASGSM 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTAATC GTGGCTACAA ATTGCGTATC CTTTTTTTGA ATTTTGCTAT TCGTTCTATT 60
TATTTTACTT AAATGTGCGT TAAGTTTGAA TTTTACTGTG TTGTTATGTT TTCTGTTTGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

sly:101261287

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005897	Arabidopsis lyrata	51.51	1.00e-167	582.00
IUUC-Ath-006686	Arabidopsis thaliana	42.65	0.00e+00	748.00
IUUC-Bol-015355	Brassica oleracea	59.07	4.00e-171	595.00
IUUC-Bra-017265	Brassica rapa	43.62	0.00e+00	768.00
IUUC-Gma-043341	Glycine max	60.94	0.00e+00	702.00
IUUC-Mtr-057706	Medicago truncatula	54.50	0.00e+00	658.00
IUUC-Pop-100006	Populus trichocarpa	60.43	0.00e+00	729.00
IUUC-Ppe-101697	Prunus persica	61.17	0.00e+00	678.00
IUUC-Tca-121590	Theobroma cacao	62.85	0.00e+00	725.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence