iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.90e-08	34.2	138	180

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C++Cl++f+d+  +++ p C H+fh dC+  w       +++++CPlCr
   Q: 138  CSVCLSEFQDEekLRIIPnCSHLFHIDCIDVW------LQNNANCPLCR 180
           ********55444999999*************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDLSNRRNPL RDLSFPPPPP PPIFHRASST GTSFPILAVA VIGILATAFL LVSYYVFVIK 60
CCLNWHRIDI LGRFSLSRRR RNDQDPLMVY SPELRSRGLD ESVIRAIPIF KFKKRYDQND 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCCACCACTA GTACATAAAC AAACAAATTT TCAATTTTCC CACCAATCAA ATTTAACTTG 60
TATATTCAAT TCTACTTTTA AATCTTGATA TAAAAGAATT CTTGTAGTAA ACGAGTCACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT5G43420

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000279	Aegilops tauschii	35.76	9.00e-33	133.00
IUUC-Atr-003120	Amborella trichopoda	43.25	2.00e-50	192.00
IUUC-Aly-006068	Arabidopsis lyrata	89.52	2.00e-164	571.00
IUUC-Bdi-014676	Brachypodium distachyon	40.27	2.00e-28	117.00
IUUC-Bol-016276	Brassica oleracea	76.02	5.00e-133	466.00
IUUC-Bra-017431	Brassica rapa	72.92	2.00e-126	444.00
IUUC-Gma-044038	Glycine max	55.62	9.00e-76	276.00
IUUC-Hvu-047348	Hordeum vulgare	35.64	8.00e-34	136.00
IUUC-Lpe-051091	Leersia perrieri	34.86	5.00e-33	134.00
IUUC-Mtr-057939	Medicago truncatula	48.96	3.00e-71	261.00
IUUC-Mac-065349	Musa acuminata	43.97	1.00e-56	212.00
IUUC-Obr-076646	Oryza brachyantha	35.95	5.00e-38	150.00
IUUC-Oin-080156	Oryza indica	33.22	2.00e-34	138.00
IUUC-Olo-080454	Oryza longistaminata	34.43	1.00e-35	143.00
IUUC-Opu-083709	Oryza punctata	35.25	1.00e-35	143.00
IUUC-Pop-098991	Populus trichocarpa	59.35	5.00e-83	300.00
IUUC-Ppe-101210	Prunus persica	60.47	4.00e-82	297.00
IUUC-Sit-110640	Setaria italica	32.03	1.00e-32	133.00
IUUC-Sly-111856	Solanum lycopersicum	51.94	3.00e-77	281.00
IUUC-Stu-111992	Solanum tuberosum	53.71	1.00e-74	272.00
IUUC-Tca-121116	Theobroma cacao	63.07	3.00e-102	363.00
IUUC-Tae-124958	Triticum aestivum	36.09	3.00e-33	134.00
IUUC-Tur-126127	Triticum urartu	35.83	1.00e-32	132.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence