iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111899

Ensembl Protein ID

Solyc02g085840.2.1

UniProt Accession

Q9STA6; Q9STA6_SOLLC

Genbank Protein ID

CAB51544.1

Protein Name

RAD23 protein

Genbank Nucleotide ID

AJ243875

Gene Name

rad23

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc02g085840.2	Solyc02g085840.2.1	Solyc02g085840.2.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	5.50e-24	84.3	155	196
ULD/UDP/UBQ/UBQ_PIM	5.30e-26	91.1	1	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           +e  ++q+ +MG   +dr+++++aLraa+nn+e+Av+yL++g
   Q: 155  LETTVQQILDMGggsWDRDTVVRALRAAYNNPERAVDYLYSG 196
           6889***********************************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mk++vktlkg++fe+ev+++d+v+++K++i++++g   +p++qq LI++Gk+LkD ttL+e+++ ++s+v+++++k+k
   Q: 1    MKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGqdvYPAAQQMLIHQGKVLKDTTTLEENKVAENSFVVIMLSKNK 78
           99*************************************************************************986 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MKIFVKTLKG THFEIEVKPE DSVADVKKNI ESVQGQDVYP AAQQMLIHQG KVLKDTTTLE 60
ENKVAENSFV VIMLSKNKVS STGTSSISAA LSNTAQPDGS TDQARQTITT PQATAALPQS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACATCAGCTA CGATTTCACT GTGACTCCGA CTTCGGAATT TTTTGCTCTC TCCGAACATT 60
CCGCCGGCGA CGGCCGGTAA TTTCTCGTGC CGGTTTCAAA ATAAGAAGAT TAACGGGTAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

sly:101246007

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ago-007830	Ashbya gossypii	31.84	7.00e-18	84.30
IUUC-Acl-008212	Aspergillus clavatus	37.40	3.00e-30	125.00
IUUC-Afl-008605	Aspergillus flavus	40.00	7.00e-31	127.00
IUUC-Aor-010032	Aspergillus oryzae	40.00	8.00e-31	127.00
IUUC-Bdi-014718	Brachypodium distachyon	60.72	8.00e-114	402.00
IUUC-Bol-015354	Brassica oleracea	70.51	5.00e-125	440.00
IUUC-Bra-016769	Brassica rapa	70.00	7.00e-125	439.00
IUUC-Cne-027056	Cryptococcus neoformans	30.65	2.00e-18	85.90
IUUC-Dno-030017	Dasypus novemcinctus	33.06	7.00e-41	160.00
IUUC-Eca-033599	Equus caballus	33.24	6.00e-37	147.00
IUUC-Fca-036051	Felis catus	34.17	9.00e-46	176.00
IUUC-Lch-050563	Latimeria chalumnae	35.29	2.00e-39	155.00
IUUC-Mcc-055860	Macaca mulatta	32.82	1.00e-41	163.00
IUUC-Mdo-062742	Monodelphis domestica	34.62	4.00e-54	204.00
IUUC-Ont-072484	Oreochromis niloticus	33.26	2.00e-49	189.00
IUUC-Obr-076631	Oryza brachyantha	69.35	4.00e-83	300.00
IUUC-Olo-080382	Oryza longistaminata	60.95	1.00e-116	412.00
IUUC-Oni-082569	Oryza nivara	60.83	3.00e-113	400.00
IUUC-Opu-083655	Oryza punctata	64.23	1.00e-81	295.00
IUUC-Oru-084989	Oryza rufipogon	60.83	3.00e-113	400.00
IUUC-Osa-085709	Oryza sativa	60.83	3.00e-113	400.00
IUUC-Ppa-095654	Physcomitrella patens	57.29	9.00e-105	372.00
IUUC-Pop-099642	Populus trichocarpa	68.80	8.00e-143	499.00
IUUC-Pca-100348	Procavia capensis	33.58	2.00e-43	168.00
IUUC-Ppe-101830	Prunus persica	72.82	1.00e-133	468.00
IUUC-Pva-102412	Pteropus vampyrus	32.41	8.00e-44	170.00
IUUC-Sha-106918	Sarcophilus harrisii	34.69	3.00e-43	168.00
IUUC-Stu-112027	Solanum tuberosum	96.41	0.00e+00	675.00
IUUC-Tni-120493	Tetraodon nigroviridis	36.44	6.00e-50	190.00
IUUC-Tca-121661	Theobroma cacao	68.11	1.00e-129	455.00
IUUC-Vvi-131039	Vitis vinifera	73.66	2.00e-147	514.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence